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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgtcttcgccttttactggtcccgcataatatttgtagttcatccataatgtgtgtgtgtatatgtatatatatgtataatatacttgatgctagtatttgcttggatattactacattcaaatcgatcaaccttatgcttttcagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTGAAACAGCAATTAGAACTTCTTTGTAGCATTTACGCTTTGTTTCTTCTTCACAAGCAT

Basic information

species Glycine max
transcript GLYMA05G04940.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404520|gb|EV274334.1|EV274334
EST:     CAGTTAATTGTTGTTTCCAA                         ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTGAAACAGCA
genomic: CAGTTAATTGTTGTTTCCAAgtgagcgtct ... tgcttttcagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTGAAACAGCA
EST: gi|192328166|gb|FK022860.1|FK022860
EST:     GATCTAGTTGAGGCAGCTGTTGCTCATTGCCAGTTAATTGTTGTTTCCAA                         ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTGAAACAGCA
genomic: GATCTAGTTGAGGCAGCTGTTGCTCATTGCCAGTTAATTGTTGTTTCCAAgtgagcgtct ... tgcttttcagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTGAAACAGCA
EST: gi|192321454|gb|FK011740.1|FK011740
EST:     GATCTAGTTGAGGCAGCTGTTGCTCATTGCCAGTTAATTGTTGTTTCCAA                         ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTGAAACAGCA
genomic: GATCTAGTTGAGGCAGCTGTTGCTCATTGCCAGTTAATTGTTGTTTCCAAgtgagcgtct ... tgcttttcagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTGAAACAGCA
EST: gi|192328167|gb|FK022861.1|FK022861
EST:     GATCTAGTTGAGGCAGCTGTTGCTCATTGCCAGTTAATTGTTGTTTCCAA                         ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTGAAACAGCA
genomic: GATCTAGTTGAGGCAGCTGTTGCTCATTGCCAGTTAATTGTTGTTTCCAAgtgagcgtct ... tgcttttcagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTGAAACAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagtatttgcttggatattactacattcaaatcgatcaaccttatgcttttcagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTGAAACAGCAATTAGAACTTCTTTGTAGCATTTACGCTTTGTTTCTTCTTCACAAGCAT
                                             tgcttttc  CT-rich tract
 atattacta  TA-rich tract