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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtccgtaagtctgttatagttatgtcagtttcattctcattatatgttgctagatgtattagacacttgacacatggtgccaactctatttgttagcagtcaatcttttatatgattatgttagatcttagtatcaaatgttttcatttttgcagGATCTGCTGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAG

Basic information

species Glycine max
transcript GLYMA05G00820.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G00820.1 (Glycine max), 3'ss of exon 12
lower sequence: AT5G07740.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaagtccgtaagtctgttatagttatgtcagtttcattctcattatatgt-tgctagatgtattagacacttgacacatggtgccaactctatttgttagcagtcaatcttttatatgattatgttagatcttagtatcaaatgttttcatttttgcagGATCTGCTGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAG
                           || ||| | |||    ||||   | | ||| || | || | |||  ||||  || |      | | | |||   | |  || ||||    || ||   |  |||| |         || |||  ||| ||||||  |||||||||||||||||||||| ||| | |  ||  | | ||| || |||||| ||||||| || ||||| || ||||||||||||||||||
---------------------------gtaagtattatttatgttattcttgttctacatctttttg-cacaagacat-tgctagttgttttgtctgt--acggataaccttt---gtggttg-atatgatcct---------tgctttgctttctgcagGCGCTGCTGTTGGATTCAAGTTGGACAGTTTATCGAAATTAAGTGATACACGTGCTGCTAACAGCAAGATGACTCTCATGCATTATCTTTGCAAG

upper sequence: GLYMA05G00820.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv17s0000g06640.t01 (Vitis vinifera), 3'ss of exon 13
gtaagtccgtaagtctgttatagttatgtcagtttcattctcattatatgttgctagatgtattagacacttgacacatggtgccaactctatttgttagcagtcaatcttttatatgattatgttagatcttagtatcaaatgttttc--atttttgcagGATCTGCTGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAG
                                               |  ||| |   | | ||      |    ||  | |   || || |         || | | ||||||| || | |||| |      || ||| | ||  |||  | |||| |||| ||||| ||||||||||||||||| ||||||||||| |||||||| || ||||| |||||||| || |||||||| |||||||||||||| |||
----------------------------------------------aacattgttgtgtttttttagtgtt---gactggataaaaattcaaac-----atagccca-cttttatgtgttgatgtga------agcatccattgacttccaagttttacagGTTCTGCGGTTGGATTCAAGTTGGACAGTCTTTTAAAACTCACTGATACACGTGCCTCTAACAGCAAGATGACACTTATGCATTATCTTTGTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatcttttatatgattatgttagatcttagtatcaaatgttttcatttttgcagGATCTGCTGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACACTGATGCATTATCTTTGCAAG
                                        ttttcattttt  CT-rich tract
     ttttatatgattatgt  TA-rich tract