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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtcatgctgaacttggatccttagtaaatgacgtcacaatgagattccaattcattgatcttttcagtagtttcagtattgctttaaaagtttacttcattgcagGAGTGTATCCAGCTGTTCACCCTCTGCCTGGCTTGCAATATTATACTTGTGGAAAACTAGAATG

Basic information

species Glycine max
transcript GLYMA04G43200.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335372|gb|CO979238.1|CO979238
EST:     CTGGACAGAAGCTTTAGCATATTGCAAATTGACCATACCATTCTATCAAA                         GAGTGTATCCAGCTGTTCACCCTCTGCCTGGCTTGCAATATTATACTTGTG
genomic: CTGGACAGAAGCTTTAGCATATTGCAAATTGACCATACCATTCTATCAAAgtgtgtcatg ... ttcattgcagGAGTGTATCCAGCTGTTCACCCTCTGCCTGGCTTGCAATATTATACTTGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattgatcttttcagtagtttcagtattgctttaaaagtttacttcattgcagGAGTGTATCCAGCTGTTCACCCTCTGCCTGGCTTGCAATATTATACTTGTGGAAAACTAGAATG
  cattgat  putative branch site (score: 4)
                                        tttacttc  putative PPT
                                tttaaaagtttactt  TA-rich tract