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...ccaggatggagtagtaaataagttttagttcatcctatttatttgtgtttgttataaattgcgtaatcgatcttaatttgaagcatgaacttttttgcagGTCCTGTCAGGTAGTGGTTGAATTTCTGACAAAGCTGGTGGTTCTCTGGTGATATTGTTCCATTCTGGTGGGCAGTATCGGAATTATATTGGAGTTGGAC
species | Glycine max |
transcript | GLYMA04G40740.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GATCACGATCCCGATCACGATCACGATCTGGATCTGGATCTCCTCATCAG GTCCTGTCAGGTAGTGGTTGAATTTCTGACAAAGCTGGTGGTTCTCTGGTGEST: gi|208068116|gb|GD861878.1|GD861878
genomic: GATCACGATCCCGATCACGATCACGATCTGGATCTGGATCTCCTCATCAGgtatttaaaa ... ttttttgcagGTCCTGTCAGGTAGTGGTTGAATTTCTGACAAAGCTGGTGGTTCTCTGGTG
EST: GGATCTCCTCATCAG GTCCTGTCAGGTAGTGGTTGAATTTCTGACAAAGCTGGTGGTTCTCTGGTGEST: gi|19453352|gb|BM954762.1|BM954762
genomic: GGATCTCCTCATCAGgtatttaaaa ... ttttttgcagGTCCTGTCAGGTAGTGGTTGAATTTCTGACAAAGCTGGTGGTTCTCTGGTG
EST: GATCACGATCCCGATCACGATCACGATCTGGATCTGGATCTCCTCATCAG GTCCTGTCAGGTAGTGGTTGAATTTCTGACAAAGCTGGTGGTTCTCTGGTGEST: gi|19453608|gb|BM955018.1|BM955018
genomic: GATCACGATCCCGATCACGATCACGATCTGGATCTGGATCTCCTCATCAGgtatttaaaa ... ttttttgcagGTCCTGTCAGGTAGTGGTTGAATTTCTGACAAAGCTGGTGGTTCTCTGGTG
EST: GATCACGATCCCGATCACGATCACGATCTGGATCTGGATCTCCTCATCAG GTCCTGTCAGGTAGTGGTTGAATTTCTGACAAAGCTGGTGGTTCTCTGGTG
genomic: GATCACGATCCCGATCACGATCACGATCTGGATCTGGATCTCCTCATCAGgtatttaaaa ... ttttttgcagGTCCTGTCAGGTAGTGGTTGAATTTCTGACAAAGCTGGTGGTTCTCTGGTG
tgtttgttataaattgcgtaatcgatcttaatttgaagcatgaacttttttgcagGTCCTGTCAGGTAGTGGTTGAATTTCTGACAAAGCTGGTGGTTCTCTGGTGATATTGTTCCATTCTGGTGGGCAGTATCGGAATTATATTGGAGTTGGAC
tcttaat putative branch site (score: 3)
cttttttgc putative PPT
ttataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaggatggagtagtaaataagttttagttcatcctatttatttgtgtttgttataaattgcgtaatcgatcttaatttgaagcatgaacttttttgcagGTCCTGTCAGGTAGTGGTTGAATTTCTGACAAAGCTGGTGGTTCTCTGGTGATATTGTTCCATTCTGGTGGGCAGTATCGGAATTATATTGGAGTTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG