1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aatatacaattacttgttctttccctttgcaccatagttgactttatttccccagttatcaaaatcaaagaagttacatgtttttcatgattatacatagGCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCGAGCACGATTTAGGACTGAAGAGCCCTTTTATGAAAATCCATATCCTGAG
species | Glycine max |
transcript | GLYMA04G39170.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATGGTGCAGCGGNATGCACAAGAACAG GCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCGEST: gi|6719527|gb|AW307174.1|AW307174
genomic: ATGGTGCAGCGG-ATGCACAAGAACAGgttactttct ... ttatacatagGCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCG
EST: GAAGAAGGAAGGGAACTATCAAATATGGTGCAGCGGATGCACAAGAACAG GCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCGEST: gi|21601591|gb|BQ611922.1|BQ611922
genomic: GAAGAAGGAAGGGAACTATCAAATATGGTGCAGCGGATGCACAAGAACAGgttactttct ... ttatacatagGCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCG
EST: GAAGAAGGAAGGGAACTATCAAATATGGTGCAGCGGATGCACAAGAACAG GCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCGEST: gi|207731193|gb|GD706610.1|GD706610
genomic: GAAGAAGGAAGGGAACTATCAAATATGGTGCAGCGGATGCACAAGAACAGgttactttct ... ttatacatagGCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCG
EST: GAAGAAGGAAGGGAACTATCAAATATGGTGCAGCGGATGCACAAGAACAG GCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCGEST: gi|12489962|gb|BG043483.1|BG043483
genomic: GAAGAAGGAAGGGAACTATCAAATATGGTGCAGCGGATGCACAAGAACAGgttactttct ... ttatacatagGCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCG
EST: GAAGAAGGAAGGGAACTATCAAATATGGTGCAGCGGATGCACAAGAACAG GCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCGEST: gi|120494144|gb|EH222311.1|EH222311
genomic: GAAGAAGGAAGGGAACTATCAAATATGGTGCAGCGGATGCACAAGAACAGgttactttct ... ttatacatagGCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCG
EST: GAAGAAGGAAGGGAACTATCAAATATGGTGCAGCGGATGCACAAGAACAG GCAAGGAGCTCCA-GGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCG
genomic: GAAGAAGGAAGGGAACTATCAAATATGGTGCAGCGGATGCACAAGAACAGgttactttct ... ttatacatagGCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCG
atttccccagttatcaaaatcaaagaagttacatgtttttcatgattatacatagGCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCGAGCACGATTTAGGACTGAAGAGCCCTTTTATGAAAATCCATATCCTGAG
tttttcatgattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatacaattacttgttctttccctttgcaccatagttgactttatttccccagttatcaaaatcaaagaagttacatgtttttcatgattatacatagGCAAGGAGCTCCAAGGAAAAGGCACGGTTCTCTACCGGGAATTAAAGGCCGAGCACGATTTAGGACTGAAGAGCCCTTTTATGAAAATCCATATCCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - ctttccc
- - - - - - - - - - - - - -tgcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatga