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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactattatgttaatgttaataatcataaacctaattccttgttatgatgcattaagtttcacctattatttatcccccttttccagTCGCAAAGTTCTTGGTCTGCCATTGGAAGAGCCAGGAAGATATATGGATGCTAGCTTTTTTGGTAAAGACCAATATGATCCTACAAGTCCTCTGTATCGT

Basic information

species Glycine max
transcript GLYMA04G36900.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335834|gb|CO979700.1|CO979700
EST:     TGGCGTAGATCATTTGAGGAAAGAGAAACATTGATTAGAGACATCAGCTG                         TCGCAAAGTTCTTGGTCTGCCATTGGAAGAGCCAGGAAGATATATGGATGC
genomic: TGGCGTAGATCATTTGAGGAAAGAGAAACATTGATTAGAGACATCAGCTGgtactattat ... ccttttccagTCGCAAAGTTCTTGGTCTGCCATTGGAAGAGCCAGGAAGATATATGGATGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattccttgttatgatgcattaagtttcacctattatttatcccccttttccagTCGCAAAGTTCTTGGTCTGCCATTGGAAGAGCCAGGAAGATATATGGATGCTAGCTTTTTTGGTAAAGACCAATATGATCCTACAAGTCCTCTGTATCGT
 acctaat  putative branch site (score: 3)
                         tttcacctattattta  putative PPT
                                tattatttat  TA-rich tract