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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattctctaacttttggaatatttttaattatatatcaattgagaggaaagattatcttgggctgcggagtaaaaaatatcttctagctatatttcgtgcacctttaatttttatattattattattatttggattatctttgtagGGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAAGTCAATATCCATGGTTTCAATGTATATCACAAAAATCGGCTTATACTG

Basic information

species Glycine max
transcript GLYMA04G35870.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G35870.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv17s0000g08750.t01 (Vitis vinifera), 3'ss of exon 11
gttattctctaacttttggaatatttttaattatatatcaattgagaggaaagattatcttgggctgcggagtaaaaaatatcttctagctatatttcgtgcacctttaatttttatattattattattatttggattatctttgtagGGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAAGTCAATATCCATGGTTTCAATGTATATCACAAAAATCGGCTTATACTG
                                                 |  ||  |  |    |||| |   |    ||   | || | |  ||  | |     |   | |||| |    ||    | ||||   ||| || || |||| |||| | | ||   || |      || |||||||| |||||||| ||||| ||||||||||| |||||||| || || || || || || ||||||
----------------------------------------------tacagggaccacttccccctgcagca-atttcattcatgctggttgcatgac-taagtttgacaattttctgaggtttaactcattttctttaactatgcagGGTACAGTTGTAACTACCATA------GGGTTTCTTAAAGAAGCTCCACAAGTGAATATCCATGGCTTCAATGTCTACCATAAGAACCGTCTAATACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691426|gb|AW759554.1|AW759554
EST:     AGTTCCCTCAATTTGTTAAATATGCACCAGTAATTGGTGGATCCGTAAAG                         GGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAA
genomic: AGTTCCCTCAATTTGTTAAATATGCACCAGTAATTGGTGGATCCGTAAAGgttattctct ... atctttgtagGGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAA
EST: gi|21256821|gb|BQ453709.1|BQ453709
EST:     ATTGGTGGATCCGTAAAG                         GGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAA
genomic: ATTGGTGGATCCGTAAAGgttattctct ... atctttgtagGGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAA
EST: gi|9203797|gb|BE330021.1|BE330021
EST:     GGATCCGTAAAG                         GGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAA
genomic: GGATCCGTAAAGgttattctct ... atctttgtagGGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAA
EST: gi|208096014|gb|GD892450.1|GD892450
EST:     AGTTCCCTCAATTTGTTAAATATGCACCAGTAATTGGTGGATCCGTAAAG                         GGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAA
genomic: AGTTCCCTCAATTTGTTAAATATGCACCAGTAATTGGTGGATCCGTAAAGgttattctct ... atctttgtagGGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcgtgcacctttaatttttatattattattattatttggattatctttgtagGGAACAGCTTTGACAGTCACAACAATTGGATTTCTTAAGGAAGCTCCTCAAGTCAATATCCATGGTTTCAATGTATATCACAAAAATCGGCTTATACTG
           ctttaat  putative branch site (score: 4)
                                           ttatcttt  putative PPT
            tttaatttttatatta  TA-rich tract