Sequence
atgc intronic sequence ATGC exonic sequence...gcttatttgtgtcaattgcaatgatcaatctatttaagtgaatcatcaatttcttgtccatggtttcttatttagttatttatgctgctcaattatacagTTGAACTACATAAACACTTCCCACCATAATTTTATTGGTGGAAGCAAAGCATTAGAAATTGCCTCGCAACAGACCAAGTCTTCTATGGTTTCTATACCTG
Basic information
species | Glycine max |
transcript | GLYMA04G16340.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G16340.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 3'ss of exon 13
gcttatttgtgtcaattgcaatgatcaatctatttaagtgaatcatcaatttcttgtccatggtttcttatttagtta-tttatgctgctcaattatacagTTGAACTACATAAACACTTCCCACCATAATTTTATTGGTGGAAGCAAAGCATTAGAAATTGCCTCGCAACAGACCAAGTCTTCTATGGTTTCTATACCTG
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-caaaccaaaaaaagaaaaaaaaagtagcaattgtatgcacttcatcaaagttaagtgttttcttgacaatggtctcagtctaagcaattctattctgtagATGGACTACATAAATACTTCACACCCAAATTTTATTGGTGGAAGTAAAGCTGTGGAGATGGCATTGCAACAGATTAAGTCCTCTAGGCTGCCTGTACCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5606454|gb|AI900488.1|AI900488EST: TAGCAATGGAG TTGAACTACATAAACACTTCCCACCATAATTTTATTGGTGGAAGCAAAGCA
genomic: TAGCAATGGAGgtatgctgaa ... aattatacagTTGAACTACATAAACACTTCCCACCATAATTTTATTGGTGGAAGCAAAGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaatttcttgtccatggtttcttatttagttatttatgctgctcaattatacagTTGAACTACATAAACACTTCCCACCATAATTTTATTGGTGGAAGCAAAGCATTAGAAATTGCCTCGCAACAGACCAAGTCTTCTATGGTTTCTATACCTG
tttcttatttagttat TA-rich tract