Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggctagtttatgttttagcggtggcattatgcgtgtggtgttggtgatatcctattatcatctttgtaactattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatagGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG

Basic information

species Glycine max
transcript GLYMA04G09070.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09070.2 (Glycine max), 3'ss of exon 12
lower sequence: AT2G25760.2 (Arabidopsis thaliana), 3'ss of exon 12
gttggctagtttatgttttagcggtggcattatgcgtgtggtgttggtgatatcctattatcatctttgta--actattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatagGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG
                       || || | ||   |    |  ||| | ||  |  || |||| | || |   ||  ||||  ||    | ||   |||| | | | || ||| ||| ||  |   |                 |||   | | ||||||||||||||||||||| ||||| |||||||| || ||||  ||  | || || || |||| |||   |||||| || || ||||| ||||
-----------------------gtagcttcatt--taatattctgg-ggtagtcatttgtcatgtctgcactgctgctatcacttccattttatgatattctccaacttgtgtattttacc-attat-----------------ttttcatctcatagGAATGGATTATGGAACAATGGGAAAAGAATTACTATATTACAGCAGTGGCAGGAGCAAATAGTGGGAACTCATTCGTGGTTATGTCAAAAG

upper sequence: GLYMA04G09070.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv09s0002g03680.t01 (Vitis vinifera), 3'ss of exon 12
---------------gttggctagtttatgttttagcggtggcattatgcgtgtggtgt-tggtgatatcctattatcatctttgtaac-tattatcgttttatctgtactgtattttactaattttgtttttaacttaac--gtaggctaacaaactcacgtt--tctgtttaatagGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG
                |||  ||    |||   ||    |     | | | ||||   |    | | ||   || |  ||  | |   | |||||      ||  | |  |  |  |||||  | |   ||| |  |||||  ||   | |  || ||    ||  ||||| || ||||||||||| ||||||||||||||||| || |  || || ||||| ||||| || |||| ||||||   |||| | |||||||||||||| |
gtgcgtctcatttcttttgtttaacccatggcatacatatttatctttacatgtgtcatgcaattaaatttcatcagtatgatcgaggcatattacaaggctacttct--ttcagcttactgttatacatttaattttaacaagtgatcaattaatctttttttgttctgtcta-tagGAATGGATAATGGAACAGTGGGAGAAAAACTTCTATATCAGTGCAATAGCAGGAGCTACTAATGGGAGCTCACTAGTTGTAATGTCTAAGG

upper sequence: GLYMA04G09070.2 (Glycine max), 3'ss of exon 12
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 12
gttggctagtttatgttttagcggtggcattatgcgtgtggtgttggtgatatcctattatcatctttgtaactattatcgttttatctgtactgtattttactaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatagGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG
                                     |||| ||  ||| | ||    |    | || |  | |||   |   || || || |  |  |  |  |  | |   | | |     | |   || |||   |   ||     ||| | |||| ||||| |||||||||||||| |||||||  || || |||||||| || || || ||||| |||  ||| ||||| || ||||||||||
-------------------------------------gtgg-gtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtc-gttcaatgatagaacagctatccctgttatgcgccatgccctcaca---ttgagtcatatttttacagGAGTGGATCATGGAACAGTGGGAAAAGAATTTCTATATCAGTGCCATCGCTGGTGCAAATAACGGAAGCTCCTTGGTCGTCATGTCTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaattttgtttttaacttaacgtaggctaacaaactcacgtttctgtttaatagGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCCGGGGCTAATAATGGATCCTCATTGGTTGTAATGTCTAAAG
                                         tttctgttt  CT-rich tract
     tttgtttttaacttaa  TA-rich tract