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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctgatattcttgtgcaaaattatctttcttttattagataatatactttaacccttgtttgaactttgaactataaattttttcctctcaatatgcagGTTTGTGAAAGTTGCATCGGAGAAAGGGAGAGCTGTGAGCTAATGCAGAAGCTTAACTATTGCAATGAGGACATATGTGTAATTCTTGTTCGTGGTAAGG

Basic information

species Glycine max
transcript GLYMA04G07850.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07850.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv04s0008g03170.t01 (Vitis vinifera), 3'ss of exon 10
----ttctgatattcttgtgcaaaattatctttcttttattagataatatactttaacccttgtttgaactttgaactataaattttttcctctcaatatg-cagGTTTGTGAAAGTTGCATCGGAGAAAGGGAGAGCTGTGAGCTAATGCAGAAGCTTAACTATTGCAATGAGGACATATGTGTAATTCTTGTTCGTGGTAAGG
    |||||   ||    |    | |     | |   |  |||  || |   | ||||| || |||   | |||       ||  | || || | | | ||  |||| |||||   |||||| |||||||| || ||||||||| ||||||| || |||||||||||||| ||||| ||| ||||     |||| ||||||||||
tgctttctggattttgaattttgagtatggctacaactcctagtgaaaaa--tgtaaccatttttt---ccttgtctctctaaagtgttgctatgattctggtagGTATGTGAGGTTTGCATTGGAGAAAGAGAAAGCTGTGAGTTAATGCAAAAACTTAACTATTGCAACGAGGATATACGTGTCTGCTTTGTACGTGGTAAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactttaacccttgtttgaactttgaactataaattttttcctctcaatatgcagGTTTGTGAAAGTTGCATCGGAGAAAGGGAGAGCTGTGAGCTAATGCAGAAGCTTAACTATTGCAATGAGGACATATGTGTAATTCTTGTTCGTGGTAAGG
  ctttaac  putative branch site (score: 3)
                                  ttttttcctctcaat  putative PPT
                  aactttgaactataaa  TA-rich tract