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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattttcgtcattatttgctgttggtattctacattataaatgttaaatttcgtaataagcttatggctctacctgaatgattggcaccattccctttattttgttttttacagTGACACTTCAAAAAAATATGATTTCGAGGATTCTAATCATGTCACATCTTCTCGTGATTCTCCTTGAACAGTCCTCAGTCTCCCTTGAAACCTAGTGCCC

Basic information

species Glycine max
transcript GLYMA04G03870.3
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|41145346|gb|CK605557.1|CK605557
EST:     TCAGCATCCTTTCGCGCACGGTTATTTAACAAAATTCATAATTTAATAGG                         TGACACTTCNNNNNNNTATGATTTCGAGGATTCTAATCATGTCACATCTTC
genomic: TCAGCATCCTTTCGCGCACGGTTATTTAACAAAATTCATAATTTAATAGGgtatattttc ... ttttttacagTGACACTTCAAAAAAATATGATTTCGAGGATTCTAATCATGTCACATCTTC
EST: gi|21638794|gb|BM139840.1|BM139840
EST:     TCAGCATCCTTTCGCGCACGGTTATTTAACAAAATTCATAATTTAATAGG                         TGACACTTCNNNNNNNTATGATTTCGAGGATTCTAATCATGTCACATCTTC
genomic: TCAGCATCCTTTCGCGCACGGTTATTTAACAAAATTCATAATTTAATAGGgtatattttc ... ttttttacagTGACACTTCAAAAAAATATGATTTCGAGGATTCTAATCATGTCACATCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttatggctctacctgaatgattggcaccattccctttattttgttttttacagTGACACTTCAAAAAAATATGATTTCGAGGATTCTAATCATGTCACATCTTCTCGTGATTCTCCTTGAACAGTCCTCAGTCTCCCTTGAAACCTAGTGCCC
                            ccattccctttatttt  CT-rich tract
                                    tttattttgtttttta  TA-rich tract