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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaattatggatgatttacaatttctgcttcgagttcagttttgcgcatatatatatatatatatatatatatatattgagttaatttctttgtttcctcccttaattatctttcctctaaacttgcagATTCTTGATAAGAATTGCTTGGGTCCACTGAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTTCGCAGGGAG

Basic information

species Glycine max
transcript GLYMA04G03710.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03710.1 (Glycine max), 3'ss of exon 12
lower sequence: AT1G47550.2 (Arabidopsis thaliana), 3'ss of exon 12
gtttaattatggatgatttacaatttctgcttcgagttcagttttgcgcatatatatatatatatatatatatatatattgagttaatttctttgtttcctcccttaattatctttcctctaaacttgcagATTCTTGATAAGAATTGCTTGGGTCCACTGAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTTCGCAGGGAG
                                        ||    |  | | ||   ||  |  | ||   || ||  | | |  | | | ||| |||||        | ||||   |||    ||||||  ||||||||||||||| ||||| ||| |||||||||| || ||||| || || |||||||| |||||  | |||
----------------------------------------gtaaaaccgagaaatgactaggtg-acatgc-taaatgctcaatgcagtacattgattcct--------tgtcttctttcttg--ttgcagGGTCTTGATAAGAATTGTTTGGGACCATTGAGAAAAGCATACTGCAGCTCCCTGAACTTGCTCCTTCGTCGAGAG

upper sequence: GLYMA04G03710.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv18s0001g11700.t01 (Vitis vinifera), 3'ss of exon 12
gtttaattatggatgatttacaatttctgcttcgagttcagttttgcgcatatatatatatatatatatatatatatattgagttaatttctttgtttcctcccttaattatctttcctctaaacttgcagATTCTTGATAAGAATTGCTTGGGTCCACTGAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTTCGCAGGGAG
                                              |  || || |||   || |  ||   |||  |  | | | |         ||   |   |   | |  ||  | |  | || |||| ||||||||||||||||||||||||| |||||||||| ||||| || || || ||||||||||||||  | |||
--------------------------------------------gtcatat-taaatacgaatttcaatgactatccaaagtggtgacacacccacttatacttctttcttttgtttttgtgcatttccagAGTCTTGATAAGAATTGCTTGGGTCCATTGAGAAAAGCCTATTGTAGCTCCCTTAACTTGCTTCTTCGTCGAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgagttaatttctttgtttcctcccttaattatctttcctctaaacttgcagATTCTTGATAAGAATTGCTTGGGTCCACTGAGAAAAGCTTATTGCAGTTCTCTAAACTTGCTTCTTCGCAGGGAG
                                         ctctaaa  putative branch site (score: 3)
           tttctttgtttcctcc  CT-rich tract
       ttaatttctttgttt  TA-rich tract