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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttttgtttaatgttgttaataacagcagaaacttggagacataatggaaatggcattcggcggacgctatattattatgatgatggccctcttctcaatctataccgggttgatatagAATGAGTTCTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCCTATGGATGTCGTGATCCTTCATGTAGGTGGCTATTA

Basic information

species Glycine max
transcript GLYMA04G03010.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03010.1 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os03g14690.1 (Oryza sativa), 3'ss of exon 11
-------------------------------------------------------------------------------------------------------------------------------------------gtcagttttgtttaatgt-tgttaataacagcagaaacttggagacataatggaaatggcattcggcggacgctatattattatgatgatggccctcttctcaatctataccgggttgatatagAATGAGTTCTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCCTATGGATGTCGTGATCCTTCATGTAGGTGGCTATTA
                                                                                                                                              || | | | | |||| ||||  | |  |||||||||||||||||||||||| |||   || || || |||||| | ||||| |||||||| ||||| ||||||||||| || || ||||| ||||| || |                                                                       
gtttgcatactggtcatcattttactattgtgttgacaatcattttgaggactttgttctttggaatatgtagtagtgatcccaaagagtttagagcaagtatttatattctgaaagccccaaaaatttacatatgtgataaagctgtatctgatgtctgtttcttattgcagAAACTTGGAGACATAATGGAGATGATGTTTGGTGGGCGCTATGTAATTATAATGATGGCACTCTTTTCAATCTATACAGGATTAATATACAATGAATTTT-----------------------------------------------------------------------

upper sequence: GLYMA04G03010.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv18s0001g13410.t01 (Vitis vinifera), 3'ss of exon 11
-----------------------------------------------------------------gtcagttttgtttaat--gttgttaataacagcagaaacttggagacataatggaaatggcattcggcggacgctatattattatgatgatggccctcttctcaatctataccgggttgatatagAATGAGTTCTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCCTATGGATGTCGTGATCCTTCATGTAGGTGGCTATTA
                                                                  | ||||  | ||| |   || ||  | || ||||||||| |||||||| ||||| ||| | || || || || ||| | |||||||||||||| || |||||||| || || || |||||||| ||||| ||||                                                                       
atttccttgtacattttgagtcttagctttacttcttaaccaattttcagtttgatggttgatctattagttcagcttacttgatttttgttgactgcagAAACTAGGAGACATCATGGAGATGACTTTTGGTGGGCGTTATGTGATTATGATGATGGCACTGTTCTCAATATACACAGGATTGATATATAATGAATTCT-----------------------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgctatattattatgatgatggccctcttctcaatctataccgggttgatatagAATGAGTTCTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCCTATGGATGTCGTGATCCTTCATGTAGGTGGCTATTA
                                            ggttgat  putative branch site (score: 5)
     atattattatgatgat  TA-rich tract