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...ggatgagaagaggatattgatggggaaattagttacttttggctcattttatttagttcaaaactaaacatcacttgtatgcttgtgctgtttaatgcagGTTTTTGATATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGATAATTTGCTTTGCGGCCGCAGGGAGTTGTGGGAG
species | Glycine max |
transcript | GLYMA04G00530.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGGTTTAACCAG GTTTTTGATATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGATAATEST: gi|58021812|gb|CX708553.1|CX708553
genomic: GGGTTTAACCAGgttttatgct ... tttaatgcagGTTTTTGATATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGATAAT
EST: AGACTGGAATCATGCGGCAAATAGAAGCATTTAGAGCAGGGTTTAACCAG GTTTTTGATATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGATAATEST: gi|208027054|gb|GD826824.1|GD826824
genomic: AGACTGGAATCATGCGGCAAATAGAAGCATTTAGAGCAGGGTTTAACCAGgttttatgct ... tttaatgcagGTTTTTGATATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGATAAT
EST: GGGTTTAACCAG GTTTTTGATATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGATAATEST: gi|207701146|gb|GD682391.1|GD682391
genomic: GGGTTTAACCAGgttttatgct ... tttaatgcagGTTTTTGATATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGATAAT
EST: GGGTTTAACCAG G-TTTTGATATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGATAATEST: gi|5509212|gb|AI855770.1|AI855770
genomic: GGGTTTAACCAGgttttatgct ... tttaatgcagGTTTTTGATATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGATAAT
EST: AGACTGGAATCATGCGGCAAATAGAAGCATTTAGAGCAGG-TTTAACCAG -TTTTTGATATCTCATC
genomic: AGACTGGAATCATGCGGCAAATAGAAGCATTTAGAGCAGGGTTTAACCAGgttttatgct ... tttaatgcagGTTTTTGATATCTCATC
attttatttagttcaaaactaaacatcacttgtatgcttgtgctgtttaatgcagGTTTTTGATATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGATAATTTGCTTTGCGGCCGCAGGGAGTTGTGGGAG
aaaactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatgagaagaggatattgatggggaaattagttacttttggctcattttatttagttcaaaactaaacatcacttgtatgcttgtgctgtttaatgcagGTTTTTGATATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGATAATTTGCTTTGCGGCCGCAGGGAGTTGTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - gatgggg
- - - - - - - - - - - - - - - - - -cttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgctg