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...aaagctatgtagtgcgtgtaaattacagtatcctgttatttatgaaaaccattgttacttttaagttaatatgtttttaacattacatacattaatacagTGTATGAAAAGATATTAACGCCCCAGATCGGATGGACTGGCCATTGTTCAGAGACACATGACTCAGGTTCAGCTTGGAACGCCAACTTTGCCCCATAAAG
species | Glycine max |
transcript | GLYMA03G41180.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGCAGAAGTTTGGGATGAATCACTAGAGGCTCCCTTCTGACGTCATTTAT TGTATGAAAAGATATTAACGCCCCAGATCGGATGGACTGGCCATTGTTCAGEST: gi|31474182|gb|CD416210.1|CD416210
genomic: TGCAGAAGTTTGGGATGAATCACTAGAGGCTCCCTTCTGACGTCATTTATgtaagttgaa ... attaatacagTGTATGAAAAGATATTAACGCCCCAGATCGGATGGACTGGCCATTGTTCAG
EST: TGCAGAAGTTTGGGATGAATCACTAGAGGCTCCCTTCTGACGTCATTTAT TGTATGAAAAGATATTAACGCCCCAGATCGGATGGACTGGCCATTGTTCAGEST: gi|31307737|gb|CD392940.1|CD392940
genomic: TGCAGAAGTTTGGGATGAATCACTAGAGGCTCCCTTCTGACGTCATTTATgtaagttgaa ... attaatacagTGTATGAAAAGATATTAACGCCCCAGATCGGATGGACTGGCCATTGTTCAG
EST: GCAGAAAGTTTGGGATGAATCACTAGAGGCTCCCTTCTGACGTCATTTAT TGTATGAAAAAGATATTAACGCCCCAGATCGGATGGACTGGCCATTGTTCAEST: gi|17023595|gb|BM094629.1|BM094629
genomic: GCAG-AAGTTTGGGATGAATCACTAGAGGCTCCCTTCTGACGTCATTTATgtaagttgaa ... attaatacagTGTATG-AAAAGATATTAACGCCCCAGATCGGATGGACTGGCCATTGTTCA
EST: TGCAGAAGTTTGGGATGAATCACTAGAGGCTCCCTTCTGACGTCATTTAT TGTATGAAAAGATATTAACGCCCCAGATCGGATGGACTGGCCATTGTTCAG
genomic: TGCAGAAGTTTGGGATGAATCACTAGAGGCTCCCTTCTGACGTCATTTATgtaagttgaa ... attaatacagTGTATGAAAAGATATTAACGCCCCAGATCGGATGGACTGGCCATTGTTCAG
aaaccattgttacttttaagttaatatgtttttaacattacatacattaatacagTGTATGAAAAGATATTAACGCCCCAGATCGGATGGACTGGCCATTGTTCAGAGACACATGACTCAGGTTCAGCTTGGAACGCCAACTTTGCCCCATAAAG
ttttaagttaatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagctatgtagtgcgtgtaaattacagtatcctgttatttatgaaaaccattgttacttttaagttaatatgtttttaacattacatacattaatacagTGTATGAAAAGATATTAACGCCCCAGATCGGATGGACTGGCCATTGTTCAGAGACACATGACTCAGGTTCAGCTTGGAACGCCAACTTTGCCCCATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - -tatgtag
- - - - - - tgcgtgt
- - - - - - - - - - - - - - - -cctgtta
- - - - - - - - - - - - - - - - - - - - - -gaaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacatac