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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagcaacatgtgggggctgtttaaaacctcggatacaatcttaaggtttgatgtttctaaaaatgacactttgtaaaatgcagTTCACCTTGTCCGGTCACACTGAACTGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATG

Basic information

species Glycine max
transcript GLYMA03G40290.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 12
lower sequence: LOC_Os05g05590.1 (Oryza sativa), 3'ss of exon 13
-------------gtaagagcaaca-tgtgggggctgtttaaaacctcggatacaat--cttaaggtttgatgtttctaaaaatgacacttt-gtaaaa---tgcagTTCACCTTGTCCGGTCACACTGAACTGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATG
             || |      |  | ||   |   |||  |||| |    ||| |   |||        |  |   | |  | ||  | | ||||||   |||||||||||   || ||||| |||||| |||||| |||||| |||||||||||||||||  | | |||||| ||  |||||||||||
gtgatgtttgatggttaacctgcctctctgaaagtgatttggaaccactaccacattaatttactaaaacctagtctgatatgtaacgttctcgtaaaactttgcagTTCACCGCATCTGGTCATACTGAATTGCGAATCAATGCTATCATGATCACCAGCACAGTCATTGTTGTTCTGTTCAGCACAATG

upper sequence: GLYMA03G40290.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G063492_T01 (Zea mays), 3'ss of exon 13
---------------------------gtaagagcaacatgtgggggctgtttaaaacctcggatacaatcttaaggtttgatgtttctaaaaatgacactttgtaaaat---gcagTTCACCTTGTCCGGTCACACTGAACTGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATG
                            |  || |    | |  |   | |  |   | | |  |       ||  |   | | ||  | | |||    |  ||||||||   |||||| ||    || |||||||||||| |||||  |||||| |||||||||||||||||  ||| |||||| ||  |||||||||||
gtgatgtttgcagcgaattctcatctgctttgaacctgctatcagatttttacatgtcattgcttgagcatctataggaggctcttctttacaatag-gccatgtaaaattttgcagTTTACAGCATCTGGTCACACTGAAGTGCGAGTCAATGCTATCATGATCACCAGCACAGTTATTGTTGTTCTATTCAGCACAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcggatacaatcttaaggtttgatgtttctaaaaatgacactttgtaaaatgcagTTCACCTTGTCCGGTCACACTGAACTGCGAACCAATGCCATCATGATCACCAGCACCATTACTGTTGTGCTTGTCAGCACAATG
                          ttctaaa  putative branch site (score: 2)
                      atgtttctaaaaat  TA-rich tract