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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttcatgtgttttcataatgtgtaagttaccttgattatcactgatattcaaatggatagacaattgatactaaattgattcttctttcaatatgcagTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAAT

Basic information

species Glycine max
transcript GLYMA03G40000.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40000.1 (Glycine max), 3'ss of exon 12
lower sequence: AT3G05190.1 (Arabidopsis thaliana), 3'ss of exon 12
----gttttcatgtgttttcataatgtgtaagttaccttgattatcactgatattcaaatggatagacaattgatactaaattgattcttctttcaat--atgcagTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAAT
       ||   |  || | | ||      ||||    | || || | |    |  |  | | |  |||    | | |    || |  |||||||||   ||||||||||||| ||||||||||| || |||||||| |||  | |||| || || || || ||||| || |||||||| ||||| || |||
gtaaacctttcagctttatgagaaca-accagttgtgctaat-atgattaccttggagtttggtttacatgaaagatttg--tgttctttctttcaaataatgcagTGCTTGCCGAATGGAAGCCTCCGGTATATGACAATGAAGGTGGAATTGTGCTGGTGACTGCAACCACACGCCGCAATTCGCCTAAT

upper sequence: GLYMA03G40000.1 (Glycine max), 3'ss of exon 12
lower sequence: AT5G27410.2 (Arabidopsis thaliana), 3'ss of exon 22
gttttcatgtgttttcataatgtgtaagttaccttgattatcactgatattcaaatggatagacaattgatactaa-attgattcttctttcaatatgcagTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAAT
       |    |||||  || | |   || |    || |  ||| | | ||    | |||     ||   | ||  || | || |      | | || ||||||||||||||||||||| || |||||||| |||    | || || || || || ||||| || |||||||| |||||||| || 
------gtaaagtttca-gatttttctcttgcaagcat-acaactaa-actctgtggaatatggttttttgagtattatcgtttttcaaaatattgtgtagTGCTTGCTGAATGGAAGCCTCCGGTATATGACAATGATGGCGGAATTGTGCTGGTGACTGCAACTACACGCCGGAATTCACCCAAC

upper sequence: GLYMA03G40000.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv14s0128g00100.t01 (Vitis vinifera), 3'ss of exon 22
--gttttcatgtgttttcataatgtgtaagttaccttgattatcactgatattcaaatggatagacaat-tgatacta-aattgattcttctttcaatatgcagTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAAT
   || | |     |  |    | | |  |||||||  |  ||   || ||| |  ||| ||||      | | ||   | || ||   ||||  || ||||||||||||||||||||||||| || || ||||| ||||||   |||||   ||| || |||||||| ||||| |||||||||||||||
ttattctaaaaaactacccc--ttttttggttacctctagaat--atgctatccctatgtataggtttccttacacagcagttcatgtctcttgaaaaatgcagTGCTTGCTGAATGGAAGCCACCCGTCTATGACAATACAAAGGGTATTACTCTGGTGACTGCTACTACACGTCGTAATTCACCAAAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205448|gb|BU964701.1|BU964701
EST:     TTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTG                         TGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTC
genomic: TTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTGgtaacttcct ... caatatgcagTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTC
EST: gi|17021927|gb|BM092961.1|BM092961
EST:     TTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTG                         TGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTC
genomic: TTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTGgtaacttcct ... caatatgcagTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTC
EST: gi|6724770|gb|AW309169.1|AW309169
EST:     TTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTG                         TGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTC
genomic: TTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTGgtaacttcct ... caatatgcagTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatattcaaatggatagacaattgatactaaattgattcttctttcaatatgcagTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAAT
                                ttgattcttctttc  CT-rich tract
                   aattgatactaaatt  TA-rich tract