Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatactttttgaataagctattctgtttatttatttaactttgctctgttagtttattagttctggctgatgttcttgctgcccgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATGCGAGGAAGCAGTGCCCGTTTCTTGGCTTGTGATAATGTGAAAAATGTAA

Basic information

species Glycine max
transcript GLYMA03G38850.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38850.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 12
--gtatgatactttttgaataagctattctgtttatttatttaactttgctctgttagtttattagttctggctgatgttcttgctgcccgtgt--accagAATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATGCGAGGAAGCAGTGCCCGTTTCTTGGCTTGTGATAATGTGAAAAATGTAA
   |   ||  |  |  || ||  |  || |      | | |   ||| |  ||  |  || |||   |||  || | ||  ||||||   |||  | |||||||||||||||| |||||||||||||||||||||||||| || |||||||| || ||||| ||||| || |||||  | ||||    |   |||||| |
gtatgcaatcatcctgaaacaattttatcagcaccagtgtcttgttttcccatgcaaagttgtta---ctgattgttattgctgctgcttctgtcaatcagAATTGAAGGGAGTACCAGTTGAGATTTTGGTGAAATTGATCCCGGAACATGCAAGAAAGCAATGCCCCTTCCTTGGGCTATGATTCCATCTGAAATGTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296807|gb|FG993105.1|FG993105
EST:     CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATTTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATG
genomic: CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatact ... cgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATG
EST: gi|15285595|gb|BI469486.1|BI469486
EST:     CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATG
genomic: CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatact ... cgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATG
EST: gi|21888144|gb|BQ741366.1|BQ741366
EST:     CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATG
genomic: CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatact ... cgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATG
EST: gi|19054267|gb|BM732934.1|BM732934
EST:     CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATG
genomic: CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatact ... cgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATG
EST: gi|22931093|gb|BU548232.1|BU548232
EST:     CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATG
genomic: CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatact ... cgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATG
EST: gi|21994002|gb|BQ785530.1|BQ785530
EST:     CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATG                         AATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATG
genomic: CTTGCCAAATGGTCGTTTCCTTCCACCATTGTTCAATTTTAAATCTCATGgtatgatact ... cgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgctctgttagtttattagttctggctgatgttcttgctgcccgtgtaccagAATTGAAGGGAGTCCCAGTTGAGATTTTGGTGAAATTGATTCCAGAACATGCGAGGAAGCAGTGCCCGTTTCTTGGCTTGTGATAATGTGAAAAATGTAA
                          ggctgat  putative branch site (score: 4)
          ttagtttattagtt  TA-rich tract