Sequence
atgc intronic sequence ATGC exonic sequencegtaaattgagtgatcaggcttttatgatggttttcttgtctgcatttaagcagaacaatttactgttgttttgatgccaaaaaatgtatatatagcacggaagacatgttctgggaaaaaaatatgttcctcaatgcacagaaattttgaagtatggatttttcttttgcagGTTCCGAATTTGAAATGGGAAGATGTTGGTGGGCTTGAAGATATCAAAAAGTCAATCCTGGATACTGTTCAG
Basic information
species | Glycine max |
transcript | GLYMA03G36930.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G36930.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G445617_T02 (Zea mays), 3'ss of exon 8
gtaaattgagtgatcaggcttttatgatggttttcttgtctgcatttaagcagaacaatttactgttgttttgatgccaaaaaatgtatatatagcacggaagacatgttctgggaaaaaaatatgttcctcaatgcacagaaattttgaagtatggatttttcttttgcagGTTCCGAATTTGAAATGGGAAGATGTTGGTGGGCTTGAAGATATCAAAAAGTCAATCCTGGATACTGTTCAG----------------------------
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-------------------------------------------------------------gtaaacattttgattctagctttcaggactat----cagctgataggccatgaatcgtacgtagtgattttaacttgc------ctctgagtacaaattgtttttt---agGTTCCTAATGTCAAATGGGAAGATGTTGGTGGGCTAGAGGATGTGAAAAAGGTTATTCTAGATACTATTCAGGTAAATTGGACTTGATTCAACTGTAAAT
upper sequence: GLYMA03G36930.1 (Glycine max), 3'ss of exon 12
lower sequence: AT1G03000.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaaattgagtgatcaggcttttatgatggttttcttgtctgcatttaagcagaacaatttactgttgttttgatgccaaaaaatgtatatata-gcacggaagacatgttctgggaaaaaaatatgttcctcaatgcacagaaattttgaagtatggatttttcttttgcagGTTCCGAATTTGAAATGGGAAGATGTTGGTGGGCTTGAAGATATCAAAAAGTCAATCCTGGATACTGTTCAG----------------------------
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---------------------------------------------gtaacattcacagttttct--tgctgtggtgttttctcgtttgtttgtctatttatgagacaagttt--gcatatttttttgttactggagatgcacataacttaaaggttta--tttgtattcgtagGTTCCAAATGTGAAATGGGATGATGTTGGTGGGCTTGAGGATGTGAAGACATCGATATTGGACACAGTTCAACTACCTCTCCTGCATAAAGATTTATTTT
upper sequence: GLYMA03G36930.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv07s0104g01610.t01 (Vitis vinifera), 3'ss of exon 7
gtaaattgagtgatca-ggcttttatgatggttttcttgt-ctgcatt-taagcagaacaatttactgttgttttgatgccaaaaaatgtatatatagcacggaagacatgttctgggaaaaaaatatgttcctcaatgcacagaaattttgaagtatggatttttcttttgcagGTTCCGAATTTGAAATGGGAAGATGTTGGTGGGCTTGAAGATATCAAAAAGTCAATCCTGGATACTGTTCAG
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gtaaactgaggagcaatagtagctaaatttgtgccatgatgttacattctgggtttgatcattcagcaaaagttttaaattttc--ttgagcaggcagtg-agttctcttttcttcctagagaaatctattgctgcctgta------tttctgagtctttcttgctttgacctagGTTCCTAATGTCAAATGGGAAGATGTTGGTGGGCTTGAGGATGTGAAGAAGTCGATTCTAGATACTGTTCAG
upper sequence: GLYMA03G36930.1 (Glycine max), 3'ss of exon 12
lower sequence: PP1S68_6V6.1 (Physcomitrella patens), 3'ss of exon 8
gtaaattgagtgatcaggcttttatgatggttttcttgtctgcatttaagcagaacaatttactgttgttttgatgccaaaaaatgtatatatagcacggaagacatgttctgggaaaaaaatatgttcctcaatgcacagaaattttgaagtatggatttttcttttgcagGTTCCGAATTTGAAATGGGAAGATGTTGGTGGGCTTGAAGATATCAAAAAGTCAATCCTGGATACTGTTCAG
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------------------------------------------------------------------ggtcaagaagtcta---gtgtatatgttgcttcgacagagcatt-tgcatcccgtgcatgtggcattgt-tactactattttcaa-tattgttgttgtatttccagATTCCAAATGTGAAATGGGAAGATGTTGGGGGGCTTGAGGATGTGAAAAAGGCTATTCTCGACACAGTGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaaatatgttcctcaatgcacagaaattttgaagtatggatttttcttttgcagGTTCCGAATTTGAAATGGGAAGATGTTGGTGGGCTTGAAGATATCAAAAAGTCAATCCTGGATACTGTTCAG
tttttcttttgc CT-rich tract
aaattttgaagtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaattgagtgatcaggcttttatgatggttttcttgtctgcatttaagcagaacaatttactgttgttttgatgccaaaaaatgtatatatagcacggaagacatgttctgggaaaaaaatatgttcctcaatgcacagaaattttgaagtatggatttttcttttgcagGTTCCGAATTTGAAATGGGAAGATGTTGGTGGGCTTGAAGATATCAAAAAGTCAATCCTGGATACTGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA