Sequence
atgc intronic sequence ATGC exonic sequence...cctggtgaattatatttgaagagtttatgcatgctatttgtgcagatgccaattttaagatatctattttcattttctgctttcttccaactgtgtacagGTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCAC
Basic information
species | Glycine max |
transcript | GLYMA03G34650.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G34650.1 (Glycine max), 3'ss of exon 12
lower sequence: AT3G53090.1 (Arabidopsis thaliana), 3'ss of exon 11
----------------------cctggtgaattatatttgaagagtttatgcatgcta-tttgtg-cagatgccaattttaagatatctattttcattttctgctttcttccaactgtgtacagGTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCAC
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gtaataactcttaatcagaagtcctgatctctacgttttctttctattctgtttgccaatttatgacatatgctgagagtttgagtgcggcttgtataatttctctctgggcatcctgtctcagGTCATGAAAGGCTTTGAACCGAGTGAACGTTGCTTGCTCCTCAAATTTGTGACTAGTTGTTCTCGGGCACCACTCCTTGGTTTCAAATACTTGCAGCCAA
upper sequence: GLYMA03G34650.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 3'ss of exon 11
cctggtgaattatatttgaagagtttatgcatgctatttgtgcagatgccaattttaagatatct---attttcattttctgctttcttccaactgtgt-acagGTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCAC
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ccttctgaaccatatatcctga--ttgaggacacc--ttctaaaactggttagtgtaatatattttatgtttctattgaacttgttctgattattatgtcacagGTCATTACAGGTTTTGAACCAAAAGAACGCTGTATGCTTCTTAAATTTGTGACAAGTTGTTCTCGAGCTCCATTACTTGGATTTAAACACCTGCAGCCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51344285|gb|CO985018.1|CO985018EST: ACACTGGTGGTTACAATGAGGGAAGCCGGACAATCAAGATTTTTTGGGAG GTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTC
genomic: ACACTGGTGGTTACAATGAGGGAAGCCGGACAATCAAGATTTTTTGGGAGgtatttgcat ... ctgtgtacagGTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgccaattttaagatatctattttcattttctgctttcttccaactgtgtacagGTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCAC
aattttaagatatcta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cctggtgaattatatttgaagagtttatgcatgctatttgtgcagatgccaattttaagatatctattttcattttctgctttcttccaactgtgtacagGTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCAC
cctggtg
- - - - - - - - - - - - - - gcatgct
- - - - - - - - - - - - - - - - - - - - - cagatgc