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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttgtttttaccatcaattcctttacgttaatgtgcattttgatctcaataattgacatttagtttatttatccttacaaagttactgcccaattgtagGTTTAGACGAATGATTGGACATGTAATTCAAACATCTGCTTCACATTACTTACTGTACAACTCATATG

Basic information

species Glycine max
transcript GLYMA03G32620.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193377981|gb|FK344098.1|FK344098
EST:     CCAAGTTACTTTCCTGAGGAGACCATCGTTGGTGTCAGTCAGTGAGCAAG                         GTTTAGACGAATGATTGGACATGTAATTCAAACATCTGCTTCACATTACTT
genomic: CCAAGTTACTTTCCTGAGGAGACCATCGTTGGTGTCAGTCAGTGAGCAAGgttatacatt ... ccaattgtagGTTTAGACGAATGATTGGACATGTAATTCAAACATCTGCTTCACATTACTT
EST: gi|13240435|gb|BG359744.1|BG359744
EST:     CCAAGTTACTTTCCTGAGGAGACCATCGTTGGTGTCAGTCAGTGAGCAAG                         GTTTAGACGAATGATTGGACATGTAATTCAAACATCTGCTTCACATTACTT
genomic: CCAAGTTACTTTCCTGAGGAGACCATCGTTGGTGTCAGTCAGTGAGCAAGgttatacatt ... ccaattgtagGTTTAGACGAATGATTGGACATGTAATTCAAACATCTGCTTCACATTACTT
EST: gi|254330519|gb|GR841784.1|GR841784
EST:     CCAAGTTACTTTCCTGAGGAGACCATCGTTGGTGTCAGTCAGTGAGCAAG                         GTTTAGACGAATGATTGGACATGTAATTCAAACATCTGCTTCACATTACTT
genomic: CCAAGTTACTTTCCTGAGGAGACCATCGTTGGTGTCAGTCAGTGAGCAAGgttatacatt ... ccaattgtagGTTTAGACGAATGATTGGACATGTAATTCAAACATCTGCTTCACATTACTT
EST: gi|8401969|gb|BE057603.1|BE057603
EST:     CCAAGTTACTTTCCTGAGGAGACCATCGTTGGTGTCAGTCAGTGAGCAAG                         GTTTAGACGAATGATTGGACATGTAATTCAAACATCTGCTTCACATTACTT
genomic: CCAAGTTACTTTCCTGAGGAGACCATCGTTGGTGTCAGTCAGTGAGCAAGgttatacatt ... ccaattgtagGTTTAGACGAATGATTGGACATGTAATTCAAACATCTGCTTCACATTACTT
EST: gi|13480824|gb|BG510167.1|BG510167
EST:     CCAAGTTACTTTCCTGAGGAGACCATCGTTGGTGTCAGTCAGTGAGCAAG                         GTTTAGACGAATGATTGGACATGTAATTCAAACATCTGCTTCACATTACTT
genomic: CCAAGTTACTTTCCTGAGGAGACCATCGTTGGTGTCAGTCAGTGAGCAAGgttatacatt ... ccaattgtagGTTTAGACGAATGATTGGACATGTAATTCAAACATCTGCTTCACATTACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaataattgacatttagtttatttatccttacaaagttactgcccaattgtagGTTTAGACGAATGATTGGACATGTAATTCAAACATCTGCTTCACATTACTTACTGTACAACTCATATG
                           tccttac  putative branch site (score: 2)
     taattgacatttagtt  TA-rich tract