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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtcttcactattactttccttgtcctgctaaattcactcatattatgtagttggtgattcttctctttgtatttctaagtgttcttcatctctaatgagattctttaattcaatgttacatgcagGCTATATTGCATTTTGAGGCTATTCAACCCTTGCCAAAGCGCGTTGATATTGACTTTCTGGAGTCATGGGTTGTCAAATTCATAATGCCTAACTCAGAGA

Basic information

species Glycine max
transcript GLYMA03G32410.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254341005|gb|GR854733.1|GR854733
EST:     TTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAG                         GCTATATTGCATTTTGAGGCTATTCAACCCTTGCCAAAGCGCGTTGATATT
genomic: TTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAGgtctgtcttc ... ttacatgcagGCTATATTGCATTTTGAGGCTATTCAACCCTTGCCAAAGCGCGTTGATATT
EST: gi|11275016|gb|BF325340.1|BF325340
EST:     TTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAG                         GCTATATTGCATTTTGAGGCTATTCAACCCTTGCCANAGCGCGTTGATATT
genomic: TTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAGgtctgtcttc ... ttacatgcagGCTATATTGCATTTTGAGGCTATTCAACCCTTGCCAAAGCGCGTTGATATT
EST: gi|9902862|gb|BE611830.1|BE611830
EST:     TTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAG                         GCTATATTGCATTTTGAGGCTATTCAACCCTTGCCAAAGCGCGTTGATATT
genomic: TTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAGgtctgtcttc ... ttacatgcagGCTATATTGCATTTTGAGGCTATTCAACCCTTGCCAAAGCGCGTTGATATT
EST: gi|151398619|gb|EV268490.1|EV268490
EST:     TTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAG                         GCTATATTGCATTTTGAGGCTATTCAACCCTTGCCAAAGCGCGTTGATATT
genomic: TTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAGgtctgtcttc ... ttacatgcagGCTATATTGCATTTTGAGGCTATTCAACCCTTGCCAAAGCGCGTTGATATT
EST: gi|17153380|gb|BM143313.1|BM143313
EST:     TTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAG                         GCTATATTGCATTTTGAGGCTATTCAACCCTTGCCAAAGCGCGTTGATATT
genomic: TTCTAGTTGAGGGGCTTGAGAATGTTTTGTTGTCAAAGCCACTACTTGAGgtctgtcttc ... ttacatgcagGCTATATTGCATTTTGAGGCTATTCAACCCTTGCCAAAGCGCGTTGATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttctaagtgttcttcatctctaatgagattctttaattcaatgttacatgcagGCTATATTGCATTTTGAGGCTATTCAACCCTTGCCAAAGCGCGTTGATATTGACTTTCTGGAGTCATGGGTTGTCAAATTCATAATGCCTAACTCAGAGA
                             attctttaattcaat  TA-rich tract