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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcatttgcaaaatccaatgctatttttattaagatatatagattgtatgaaattaattaacttacctgacttatgtctgactcagGGAGGCTTGAGCTCTGGTTACAAAAAATTGATAGCAGATAAAGGTTTGCCAGATGAGACATACACAGCAGAGAGTGTTGCATTTATTCGAATTTCTGGAA

Basic information

species Glycine max
transcript GLYMA03G29280.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G29280.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 12
------------------------------gtatcatttgcaaa-atccaatgctatttttattaagatatat--------agattgtatga----aattaattaacttacctga----cttatgtctgactca---gGGAGGCTTGAGCTCTGGTTACAAAAAATTGATAGCAGATAAAGGTTTGCCAGATGAGACATACACAGCAGAGAGTGTTGCATTTATTCGAATTTCTGGAA
                                   || |   |  ||  | |  ||  | | ||   |||| |        | |||| || |    |||| |||   || | | |     ||    || | | |   ||| ||  |||||||||||||||||||||  ||||||||||||||| ||   ||||| || ||||| || ||  || ||||  |  |||| || |||||||
gtactctttcttgagtttatgtaagagcttaccctatatattagtattgattattacctctgttctaatatgtgcggtttgaaattggataagcacaatttattgctttgctttaatgctttgcccctcatttattagGGTGGAATGAGCTCTGGTTACAAAAAATCCATAGCAGATAAAGGTCTGAACGATGAAACCTACACTGCTGATTGTATTGCTCTCCTTCGGATATCTGGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19935055|gb|BQ080085.1|BQ080085
EST:     AAGAGCCACCACAGTTTATTGTTCTTTTCCATCCAATGGTGGTCCTCAAG                         GGAGGCTTGAGCTCTGGTTACAAAAAATTGATAGCAGATAAAGGTTTGCCA
genomic: AAGAGCCACCACAGTTTATTGTTCTTTTCCATCCAATGGTGGTCCTCAAGgtatcatttg ... tctgactcagGGAGGCTTGAGCTCTGGTTACAAAAAATTGATAGCAGATAAAGGTTTGCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagatatatagattgtatgaaattaattaacttacctgacttatgtctgactcagGGAGGCTTGAGCTCTGGTTACAAAAAATTGATAGCAGATAAAGGTTTGCCAGATGAGACATACACAGCAGAGAGTGTTGCATTTATTCGAATTTCTGGAA
     atatagattgtatgaa  TA-rich tract