1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...tcaagtgaaaacttgcatcttactttatgctttcatagacataattttttttggtaaatttctttcttcaatatactgatgatggcatcctatcctccagGTACTAGAGGCCCTCAAGGGTTCAACATCAACCAGACCAGCCATATTTGCTATGTCAAATCCAACAAAGAATG
species | Glycine max |
transcript | GLYMA03G24630.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTGACGTTCTCCTAGGATTATCGGCTGTTGGAGGATTATTCTCAAAAGAG GTACTAGAGGCCCTCAAGGGTTCAACATCAACCAGACCAGCCATATTTGCTEST: gi|58018827|gb|CX705569.1|CX705569
genomic: CTGACGTTCTCCTAGGATTATCGGCTGTTGGAGGATTATTCTCAAAAGAGgtatctagac ... tatcctccagGTACTAGAGGCCCTCAAGGGTTCAACATCAACCAGACCAGCCATATTTGCT
EST: CTGACGTTCTCCTAGGATTATCGGCTGTGGGAGGATTATTCTCAAAAGAG GTACTAGAGGCCCTCAAGGGTTCAACATCAACCAGACCAGCCATATTTGCTEST: gi|58015662|gb|CX702404.1|CX702404
genomic: CTGACGTTCTCCTAGGATTATCGGCTGTTGGAGGATTATTCTCAAAAGAGgtatctagac ... tatcctccagGTACTAGAGGCCCTCAAGGGTTCAACATCAACCAGACCAGCCATATTTGCT
EST: CTGACGTTCTCCTAGGATTATCGGCTGTTGGAGGATTATTCTCAAAAGAG GTACTAGAGGCCCTCAAGGGTTCAACATCAACCAGACCAGCCATATTTGCTEST: gi|9264573|gb|BE352720.1|BE352720
genomic: CTGACGTTCTCCTAGGATTATCGGCTGTTGGAGGATTATTCTCAAAAGAGgtatctagac ... tatcctccagGTACTAGAGGCCCTCAAGGGTTCAACATCAACCAGACCAGCCATATTTGCT
EST: CTGACGTTCTCCTAGGATTATCGGCTGTTGGAGGATTATTCTCAAAAGAG GTACTAGAGGCCCTCAAGGGTTCAACATCAACCCAGACCAGCCATATTTGCEST: gi|207738333|gb|GD716993.1|GD716993
genomic: CTGACGTTCTCCTAGGATTATCGGCTGTTGGAGGATTATTCTCAAAAGAGgtatctagac ... tatcctccagGTACTAGAGGCCCTCAAGGGTTCAACATCAACC-AGACCAGCCATATTTGC
EST: CTGACGTTCTCCTAGGATTATCGGCTGTTGGAGGATTATTCTCAAAAGAG GTACTAGAGGCCCTCAAGGGTTCAACATCAACCAGACCAGCCATATTTGCT
genomic: CTGACGTTCTCCTAGGATTATCGGCTGTTGGAGGATTATTCTCAAAAGAGgtatctagac ... tatcctccagGTACTAGAGGCCCTCAAGGGTTCAACATCAACCAGACCAGCCATATTTGCT
tttttttggtaaatttctttcttcaatatactgatgatggcatcctatcctccagGTACTAGAGGCCCTCAAGGGTTCAACATCAACCAGACCAGCCATATTTGCTATGTCAAATCCAACAAAGAATG
tactgat putative branch site (score: 2)
tcctatcctcc putative PPT
taaatttctttcttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaagtgaaaacttgcatcttactttatgctttcatagacataattttttttggtaaatttctttcttcaatatactgatgatggcatcctatcctccagGTACTAGAGGCCCTCAAGGGTTCAACATCAACCAGACCAGCCATATTTGCTATGTCAAATCCAACAAAGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
-caagtga
- - - - - -cttgcat
- - - - - - - - - - - - - -tgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatggc