Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagttgttacattcttcaaggttgagtttagtggaataaggttttccgtttgaattttgtttgtactgtgtttttaatagatacatcgtttaacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAAACATCATGGAAATTCAGCTAATTTCGAGGGTCTGTTATTTATTATTATT

Basic information

species Glycine max
transcript GLYMA03G21690.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208335438|gb|GE133383.1|GE133383
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|207823541|gb|GD794132.1|GD794132
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|7285868|gb|AW598355.1|AW598355
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|57574028|gb|CX547003.1|CX547003
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|193712759|gb|FK655774.1|FK655774
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|58014983|gb|CX701725.1|CX701725
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|207801513|gb|GD773877.1|GD773877
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|192333549|gb|FK026850.1|FK026850
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGACTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|9900273|gb|BE609241.1|BE609241
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|192316141|gb|FK011584.1|FK011584
EST:     ATGGAGATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAG-ATGCCCAACCGATGAATATCGACAGCAAG-CATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|192319168|gb|FK009108.1|FK009108
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|6666583|gb|AW278042.1|AW278042
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGA
EST: gi|9900283|gb|BE609251.1|BE609251
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|193508335|gb|FK466178.1|FK466178
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|57574341|gb|CX547316.1|CX547316
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|192316140|gb|FK011583.1|FK011583
EST:     ATGGAGATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|208338612|gb|GE137828.1|GE137828
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
EST: gi|10254863|gb|BE822629.1|BE822629
EST:     ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAAT                         AAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA
genomic: ATGGAAATATGTTCAACAAACTGCACAAGCTAGATTCTCTTGACAGTAATgtgagtattc ... taacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgtttgaattttgtttgtactgtgtttttaatagatacatcgtttaacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAAACATCATGGAAATTCAGCTAATTTCGAGGGTCTGTTATTTATTATTATT
                                          gtttaac  putative branch site (score: 3)
                         tttttaatagatacat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gagttgttacattcttcaaggttgagtttagtggaataaggttttccgtttgaattttgtttgtactgtgtttttaatagatacatcgtttaacatgcagAAACCAGCGTCGAAGGATGCCCAACCGATGAATATCGACAGCAAGGCATAAACATCATGGAAATTCAGCTAATTTCGAGGGTCTGTTATTTATTATTATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - -tacattc
- - - - - - - - - -ggttgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtgtt