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...cgattatctgtggtgagttaactagggtttgcatgtagtatttggtattgacattttttatgccttattataattaacctatgcatttttcacatcacagGTACAACGTCTTTCAGATTGCATTCGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTT
species | Glycine max |
transcript | GLYMA03G07890.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATATTTGGCCACACCTTGGAGTCTCTTCGTGGAATTAAATATTTGTACAA GTACAACGTCTTTCAGATTGCATTCGTTGCATTGGCTGGATTGACTTTTGTEST: gi|58025422|gb|CX712163.1|CX712163
genomic: ATATTTGGCCACACCTTGGAGTCTCTTCGTGGAATTAAATATTTGTACAAgtaagtcaag ... cacatcacagGTACAACGTCTTTCAGATTGCATTCGTTGCATTGGCTGGATTGACTTTTGT
EST: ATATTTGGCCACACCTTGGAGTCTCTTCGTGGAATTAAATATTTGTACAA GTACAACGTCTTTCAGATTGCATTCGTTGCATTGGCTGGATTGACTTTTGTEST: gi|58015128|gb|CX701870.1|CX701870
genomic: ATATTTGGCCACACCTTGGAGTCTCTTCGTGGAATTAAATATTTGTACAAgtaagtcaag ... cacatcacagGTACAACGTCTTTCAGATTGCATTCGTTGCATTGGCTGGATTGACTTTTGT
EST: ATATTTGGCCACACCTTGGAGTCTCTTCGTGGAATTAAATATTTGTACAA GTACAACGTCTTTCAGATTGCATTCGTTGCATTGGCTGGATTGACTTTTGTEST: gi|192326624|gb|FK018496.1|FK018496
genomic: ATATTTGGCCACACCTTGGAGTCTCTTCGTGGAATTAAATATTTGTACAAgtaagtcaag ... cacatcacagGTACAACGTCTTTCAGATTGCATTCGTTGCATTGGCTGGATTGACTTTTGT
EST: ATATTTGGCCACACCTTGGAGTCTCTTCGTGGAATTAAATATTTGTACAA GTACAACGTCTTTCAGATTGCATTCGTTGCATTGGCTGGATTGACTTTTGTEST: gi|209705585|gb|BW673566.1|BW673566
genomic: ATATTTGGCCACACCTTGGAGTCTCTTCGTGGAATTAAATATTTGTACAAgtaagtcaag ... cacatcacagGTACAACGTCTTTCAGATTGCATTCGTTGCATTGGCTGGATTGACTTTTGT
EST: ATATTTGGCCACACCTTGGAGTCTCTTCGTGGAATTAAATATTTGTACAA GTACAACGTCTTTCAGATTGCATTCGTTGCATTGGCTGGATTGACTTTTGT
genomic: ATATTTGGCCACACCTTGGAGTCTCTTCGTGGAATTAAATATTTGTACAAgtaagtcaag ... cacatcacagGTACAACGTCTTTCAGATTGCATTCGTTGCATTGGCTGGATTGACTTTTGT
tattgacattttttatgccttattataattaacctatgcatttttcacatcacagGTACAACGTCTTTCAGATTGCATTCGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTT
aattaac putative branch site (score: 2)
catttttc putative PPT
acattttttatgcctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgattatctgtggtgagttaactagggtttgcatgtagtatttggtattgacattttttatgccttattataattaacctatgcatttttcacatcacagGTACAACGTCTTTCAGATTGCATTCGTTGCATTGGCTGGATTGACTTTTGTATATTATGCTGCCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - tgtggtg
- - - - - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctatgc