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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtagttattttatttaagctgctataaatgtaataaagcacttcagtctataaatgacttgacctccccaataatgatacagGTGCCATGGGCTGGAGTAACCACAAACCACTCCACCTCCCCATTTGCCGAGGAAATGTATGAGAAAATCAAAGACAACCTTACCCTTTACGAAGTTGTAA

Basic information

species Glycine max
transcript GLYMA02G47930.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G47930.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv12s0057g01510.t01 (Vitis vinifera), 3'ss of exon 13
----------------------------------------------------------------gtagtagttattttatttaagctgctat---aaatgtaataaagcacttcagtc--------tataaatgacttgacctccccaata-atga-----tacagGTGCCATGGGCTGGAGTAACCACAAACCACTCCACCTCCCCATTTGCCGAGGAAATGTATGAGAAAATCAAAGACAACCTTACCCTTTACGAAGTTGTAA
                                                                  |  |  |      |  | ||| | ||   |     ||  | |||||  |||          |||||   ||| |  |     | | || |     | |||||||||||| | ||||| || ||||| || |||||||| |||||||| ||||||||||| |||||||||||||||| ||||      || || || || |
gtacttctcactctcccctccctctctcccttcctccctctcccttccttcctctcccctctcttcaccaactccccattcaaggctcccattcaaggctcaaacatgcactatagttgaatctgtcataaacttctttatttttatcacatattacctcttgcagGTGCCATGGTCCGGAGTGACTACAAATCATTCCACCTCGCCATTTGCTGAGGAAATGTACGAGAAAATCAAAGACACCCTTGTTGAGTATGAGGTGGTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtaataaagcacttcagtctataaatgacttgacctccccaataatgatacagGTGCCATGGGCTGGAGTAACCACAAACCACTCCACCTCCCCATTTGCCGAGGAAATGTATGAGAAAATCAAAGACAACCTTACCCTTTACGAAGTTGTAA
                             acttgac  putative branch site (score: 4)
                                          aataatgata  TA-rich tract