1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttcaaaatggtccatgaactgataagcatttctaaagcatagcatgttgattctatacaatgtctagacaatttatctgatcttttttactttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACATGCAGAGGTTCAGTATATAACTAAATGAGAGATGAGCACTAGCCAAAACA
species | Glycine max |
transcript | GLYMA02G46430.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACATEST: gi|31461278|gb|CD403306.1|CD403306
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACATEST: gi|13481810|gb|BG511153.1|BG511153
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACATEST: gi|31464295|gb|CD406323.1|CD406323
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACATEST: gi|21676387|gb|BQ628738.1|BQ628738
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
EST: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAG GTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
genomic: AATTCAAACGTCAAAACCAAGAATATGATGAGGAACGGGTGAAGGGACAGgtttgtgcca ... tttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACAT
gttgattctatacaatgtctagacaatttatctgatcttttttactttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACATGCAGAGGTTCAGTATATAACTAAATGAGAGATGAGCACTAGCCAAAACA
atctgat putative branch site (score: 4)
tctgatcttttttact CT-rich tract
atcttttttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaaaatggtccatgaactgataagcatttctaaagcatagcatgttgattctatacaatgtctagacaatttatctgatcttttttactttcctgaagGTTCAAGAAATACTAGAAGGAGCTAAAGTGCTTGAATGGTTGAGAGAACATGCAGAGGTTCAGTATATAACTAAATGAGAGATGAGCACTAGCCAAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - catgaac
- - - - - - - - - - - - -gcatttc
- - - - - - - - - - - - - - - - - - - - -gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgtc