1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...agaaattgaaactataaaactatcttccagttaaaacttattgatagattaattagctcatttgattgtatagagcattacatggtattctttgttctagGTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTACTACAGTACCCACCCTTTCACAG
species | Glycine max |
transcript | GLYMA02G45610.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAG GTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTAEST: gi|193359948|gb|FK326720.1|FK326720
genomic: ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgt ... tttgttctagGTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
EST: ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAG GTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTAEST: gi|298181814|gb|HO025989.1|HO025989
genomic: ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgt ... tttgttctagGTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
EST: ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAG GTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTAEST: gi|151404405|gb|EV274215.1|EV274215
genomic: ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgt ... tttgttctagGTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
EST: ACATATGCATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAG GTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTAEST: gi|58023254|gb|CX709995.1|CX709995
genomic: ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgt ... tttgttctagGTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
EST: ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAG GTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
genomic: ACATATGAATCATTTGCTTAAAGCACCATTTTGTGTACATCCTAAAACAGgtcagtttgt ... tttgttctagGTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTA
agattaattagctcatttgattgtatagagcattacatggtattctttgttctagGTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTACTACAGTACCCACCCTTTCACAG
ttctttgttct CT-rich tract
atttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaattgaaactataaaactatcttccagttaaaacttattgatagattaattagctcatttgattgtatagagcattacatggtattctttgttctagGTCGTGTTTGTGTCCCTATTGATCCAAAACGGTGCGAGGAGTTTGATCCTACTACAGTACCCACCCTTTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - tcttcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattac