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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttatagccatcatttcctcttattctgtattttttcaactacataggcattatcttttaaagttttttggaatgactaaattatgcagGCGTTAAATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCACAAGCACAAACATTTCATCATGAGTACAGTTCGCTGGCTTGCACTGTTGA

Basic information

species Glycine max
transcript GLYMA02G41850.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31458680|gb|CD400708.1|CD400708
EST:     GATAGAGAAAGGTTGGTTAAATGATATTGTTGTTGACCTACGAACTGAAG                         GCGTTAAATAATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCAC
genomic: GATAGAGAAAGGTTGGTTAAATGATATTGTTGTTGACCTACGAACTGAAGgtatgattta ... aattatgcagGCGTTAAATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCAC
EST: gi|6070488|gb|AW099875.1|AW099875
EST:     GATAGAGAAAGGTTGGTTAAATGATATTGTTGTTGACCTACGAACTGAAG                         GCGTTAAATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCAC
genomic: GATAGAGAAAGGTTGGTTAAATGATATTGTTGTTGACCTACGAACTGAAGgtatgattta ... aattatgcagGCGTTAAATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCAC
EST: gi|254315842|gb|GR825651.1|GR825651
EST:     TACGAACTGAAG                         GCGTTAAA-TATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCAC
genomic: TACGAACTGAAGgtatgattta ... aattatgcagGCGTTAAATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCAC
EST: gi|192322275|gb|FK014516.1|FK014516
EST:     GATAGAGAAAGGTTGGTTAAATGATATTGTTGTTGACCTACGAACTGAAG                         GCGTTAAATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCAC
genomic: GATAGAGAAAGGTTGGTTAAATGATATTGTTGTTGACCTACGAACTGAAGgtatgattta ... aattatgcagGCGTTAAATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCAC
EST: gi|254315128|gb|GR830121.1|GR830121
EST:     GATAGAGAAAGGTTGGTTAAATGATATTGTTGTTGACCTACGAACTGAAG                         GCGTTAAATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCAC
genomic: GATAGAGAAAGGTTGGTTAAATGATATTGTTGTTGACCTACGAACTGAAGgtatgattta ... aattatgcagGCGTTAAATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCAC
EST: gi|254315841|gb|GR825650.1|GR825650
EST:     GATAGAGAAAGGTTGGTTAAATGATATTGTTGTTGACCTACGAACTGAAG                         GCGTTAAATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCAC
genomic: GATAGAGAAAGGTTGGTTAAATGATATTGTTGTTGACCTACGAACTGAAGgtatgattta ... aattatgcagGCGTTAAATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaactacataggcattatcttttaaagttttttggaatgactaaattatgcagGCGTTAAATTATATGGAGGACCAAGGGCAAGTTCTCTGTTAAATATTCCACAAGCACAAACATTTCATCATGAGTACAGTTCGCTGGCTTGCACTGTTGA
                                        gactaaa  putative branch site (score: 2)
               attatcttttaaagtt  TA-rich tract