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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcacttgattttttattcttttttgctcagcaaaaggcaaatgtattgataggtgtataagggatacccaaccatatacacaagtatggaataaagaaaatgaaacttatacatcttctacagGTGCACTTGATGACATACGGCGAGCAACTGATATGGCATACAAAGCTATAGCTGAATATGGTCTTAATCAGACAATAGGCCCTGTGTCAATTTCCACCCT

Basic information

species Glycine max
transcript GLYMA02G39040.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815297|gb|BI787572.1|BI787572
EST:     TGGAGGACGTGCTGCCGAAGAAGTTGTTTATTCTGGTCGAGTGTCAACAG                         GTGCACTTGATGACATACGGCGAGCAACTGATATGGCATACAAAGCTATAG
genomic: TGGAGGACGTGCTGCCGAAGAAGTTGTTTATTCTGGTCGAGTGTCAACAGgtgcacttga ... tcttctacagGTGCACTTGATGACATACGGCGAGCAACTGATATGGCATACAAAGCTATAG
EST: gi|208093259|gb|GD895210.1|GD895210
EST:     TGGAGGACGTGCTGCCGAAGAAGTTGTTTATTCTGGTCGAGTGTCAACAG                         GTGCACTTGATGACATACGGCGAGCAACTGATATGGCATACAAAGCTATAG
genomic: TGGAGGACGTGCTGCCGAAGAAGTTGTTTATTCTGGTCGAGTGTCAACAGgtgcacttga ... tcttctacagGTGCACTTGATGACATACGGCGAGCAACTGATATGGCATACAAAGCTATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaccatatacacaagtatggaataaagaaaatgaaacttatacatcttctacagGTGCACTTGATGACATACGGCGAGCAACTGATATGGCATACAAAGCTATAGCTGAATATGGTCTTAATCAGACAATAGGCCCTGTGTCAATTTCCACCCT
                                           catcttct  CT-rich tract
                     aataaagaaaatgaaa  TA-rich tract