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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaagatgttaatatttttgttgggttcgatttcatgagtagtatttatatttcatagcatcaaggagagagcagttttacatgctgtgctgtttgacagGGCATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCTGCCAATAAAAATACTGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGAG

Basic information

species Glycine max
transcript GLYMA02G38160.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G38160.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 3'ss of exon 12
gaaagatgttaatatttttgttgggttcgatttcatgagtagtatttatatttcatagcatcaaggagagagcagttttacatgctgtgctgtttg------acagGGCATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCTGCCAATAAAAATACTGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGAG
     |   | | ||   | |||    |   |  | ||   ||||  ||  ||  |||||| |   |  ||     || |  || ||||   |||       |||||| |||||||||||||| ||||| ||||| || ||| ||||||| || || ||||||||||| |||||||| |||||||||||||| ||||||||||| |
-----aaactgagataaatattgttcgcatataaaggatgggtataaattgtttttagcatgagaaatggaattaatt-atgtgttgtggaattttctttctacagGGTATTGATGGTTCTAGAGTTGAAAAGGTTCTTGAATCAGTTCACATTGCAGCCAATAAAAACACTGTTCCTGGGGATGTGTCTGCCATGGTTCCTGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16343418|gb|BI969013.1|BI969013
EST:     TATCTGGTGGAACTGACAACCATTTAGTGTTAGTGAACTTAAGAAACAAG                         GGCATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT
genomic: TATCTGGTGGAACTGACAACCATTTAGTGTTAGTGAACTTAAGAAACAAGgtaaatgatg ... tgtttgacagGGCATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatttcatagcatcaaggagagagcagttttacatgctgtgctgtttgacagGGCATTGATGGTTCTAGGGTTGAGAAGGTACTGGAAGCAGTTCATATAGCTGCCAATAAAAATACTGTTCCAGGGGATGTGTCTGCTATGGTTCCTGGAG
                              ttttacat  TA-rich tract