Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggcagattgattatggttaataattatgctgagttcaatttataatgagtctcctctatctttctaaaaattcataactccattattctgaacagGGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGTGAACAG

Basic information

species Glycine max
transcript GLYMA02G36440.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023146|gb|CX709887.1|CX709887
EST:     AGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAG                         GGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGTGAACAG
genomic: AGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgttggcagat ... ttctgaacagGGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGTGAACAG
EST: gi|7587962|gb|AW703768.1|AW703768
EST:     AGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAG                         GGTTATAATGGGGAAAAGGAGAAGTTGGGAAGATGCGAACAG
genomic: AGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgttggcagat ... ttctgaacagGGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGTGAACAG
EST: gi|57574575|gb|CX547550.1|CX547550
EST:     AGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAG                         GGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGTGAACAG
genomic: AGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgttggcagat ... ttctgaacagGGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGTGAACAG
EST: gi|10236909|gb|BE805797.1|BE805797
EST:     AGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAG                         GGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGTGAACAG
genomic: AGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgttggcagat ... ttctgaacagGGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGTGAACAG
EST: gi|17020797|gb|BM091831.1|BM091831
EST:     AGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAG                         GGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGTGAACAG
genomic: AGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAATTACTTAAGgttggcagat ... ttctgaacagGGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGTGAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataatgagtctcctctatctttctaaaaattcataactccattattctgaacagGGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGTGAACAG
                               tcataac  putative branch site (score: 2)
                                          ttattct  putative PPT
                tatctttctaaaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttggcagattgattatggttaataattatgctgagttcaatttataatgagtctcctctatctttctaaaaattcataactccattattctgaacagGGTTATAATGGGGAAAAGGAGAAGTTAGGAAGATGTGAACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG