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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggtatataacactgttgaattgctcttgctgagaatggtgaacttctaattggattttgattttccctcattttatttaatttttattcctttaaatagGGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTGGTTGGTTAAGGACAATGGCATGAGATATATAGGAGCATTTGTTGGATGC

Basic information

species Glycine max
transcript GLYMA02G34060.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531022|gb|EH259155.1|EH259155
EST:     TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTG                         GGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTG
genomic: TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTGgtaagataga ... ctttaaatagGGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTG
EST: gi|51341204|gb|CO982521.1|CO982521
EST:     TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTG                         GGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTG
genomic: TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTGgtaagataga ... ctttaaatagGGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTG
EST: gi|31306683|gb|CD391886.1|CD391886
EST:     TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTG                         GGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTG
genomic: TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTGgtaagataga ... ctttaaatagGGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTG
EST: gi|31307567|gb|CD392770.1|CD392770
EST:     TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTG                         GGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTG
genomic: TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTGgtaagataga ... ctttaaatagGGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTG
EST: gi|120531714|gb|EH259847.1|EH259847
EST:     TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTG                         GGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTG
genomic: TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTGgtaagataga ... ctttaaatagGGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTG
EST: gi|31456099|gb|CD398127.1|CD398127
EST:     TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTG                         GGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTG
genomic: TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTGgtaagataga ... ctttaaatagGGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTG
EST: gi|193691800|gb|FK628965.1|FK628965
EST:     TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTG                         GGCTGGAGAAGAAGTCACCTGTGTTGGATTC
genomic: TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTGgtaagataga ... ctttaaatagGGCTGGAGAAGAAGTCACCTGTGTTGGATTC
EST: gi|120531909|gb|EH260042.1|EH260042
EST:     TGTAGCTTTCTCAGGAGTTAAGTGTGCTCATCGAGTAGCTGCAGATATTG                         GGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTG
genomic: TGTAGCTTTCTCAGGAGTTATGTGTGCTCATCGAGTAGCTGCAGATATTGgtaagataga ... ctttaaatagGGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaattggattttgattttccctcattttatttaatttttattcctttaaatagGGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTGGTTGGTTAAGGACAATGGCATGAGATATATAGGAGCATTTGTTGGATGC
                                    tttttattccttt  CT-rich tract
         attttgattttccctc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tggtatataacactgttgaattgctcttgctgagaatggtgaacttctaattggattttgattttccctcattttatttaatttttattcctttaaatagGGCTGGAGAAGAAGTCACCTGTGTTGGATTCCATGCTGCTTCGGTTGCTTGGTTGGTTAAGGACAATGGCATGAGATATATAGGAGCATTTGTTGGATGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - -actgttg
- - - - - - - - - - - -ctcttgc
- - - - - - - - - - - - - - - - - aatggtg