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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttaaagcatatgatctgatggaaggctttgtttactatttaatgcagggaacaaaaatattgatgtggtattttatcttctaaaattcaatttccaattatcagtagaatagtacagtctggaatatgttttataacactaaaagtcaacttcatcagGTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAA

Basic information

species Glycine max
transcript GLYMA02G16130.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G019361_T03 (Zea mays), 3'ss of exon 10
gtttgttttaaagcatatgatctgatggaaggctttgtttactatttaatgcagggaacaaaaatattgatgtggtatttta-tcttctaaaattcaatttccaattatcagtagaatagtacagtctggaatatgttttataacactaaaagtcaacttcatcagGTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAA
                                                              | | |   | ||  |||  | |||  ||| || || |||  ||  |     | | | ||    |||    | ||||  | |    |     ||    |  | ||||||||||||| || ||||| |||||  |||||||  ||||||||||||| |||||||| || || 
----------------------------------------------------------gtgtagtttgtgtatgaaattgaaatctagtaatatacacttttgaacca-----aaagttgttagttctaagctctgttacaaattctt-----tctgtatttttagGTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAG

upper sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G321413_T01 (Zea mays), 3'ss of exon 4
gtttgttttaaagcatatgatctgatggaaggctttgtttactatttaatgcagggaacaaaaatattgatgtggtattttatcttctaaaattcaatttccaattatcagtagaatagtacagtctggaatatgttttataacactaaaagtcaacttcatcagGTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAA
                                                                | | | |   ||||   ||||  ||| || || |||  ||  |     | | | ||    |||    |  |||  | |    |     ||    |  | ||||||||||||| || ||||| |||||  |||||||  ||||||||||||| |||||||| || || 
---------------------------------------------------------------gtgtagtttgtgtatgaaatctagtaatatacacttttgaacca-----aaagttgttagttctaagctcagttacaaattctt-----tctgtatttttagGTCAATCAAATACGAGATTCGTTGGCAGTTATGGGGAACAACAGCACTGCTTTTAGCTTGCCTCAG

upper sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G305254_T04 (Zea mays), 3'ss of exon 10
gtttgttttaaagcatatgatctgatggaaggctttgtttactatttaatgcagggaacaaaaatattgatgtggtattttatcttctaaaattcaatttccaattatcagtagaatagtacagtctggaatatgttttataacactaaaagtcaacttcatcagGTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAA
                                                                ||  | |   ||||   || |  ||  || ||||||  ||  |  |   ||    ||||  ||    ||    || |    |||   ||        | ||||||||||||| || ||||| |||||  |||||||  || |||||||||| |||||||| || || 
---------------------------------------------------------------gtacagtttgtgtatgaaatatagtactatacaatttttaaccaaaaaatgatagctacaagctcagttacaaattttctttctatgtgttt------ttagGTCAATCAAATACGAGATTCTTTGGCAGTTATGGGCAACCACAGCACTGCTTTTAGCTTGCCCCAG

upper sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 12
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 3'ss of exon 11
gtttgttttaaagcatatgatctgatggaaggctttgtttactatttaatgcagggaacaaaaatattgatgtggtattttatcttctaaaattcaatttccaattatcagtagaatagtacagtctggaatatgttttataacactaaaagtcaacttcatcagGTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAA
                                                                      | || | | || | ||||  | |   |     ||| |||| ||  ||       || | |||   | || |          |||  |||  |||||| || || || ||||| || |||||||| ||||||||||||||||| ||||||||||||||||| 
---------------------------------------------------------------------gtatgttctcttgtgttctgca-tcgtacaggtaatcatcattattatc------tcagaaatcattcttgtt---------gtctcctttttcagGTTAACCAGATTCGGGACTCCTTGGCTATAATGGGTGACAACAGCACAGCCTTTAGCTTACCGCAG

upper sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 10
gtttgttttaaagcatatgatctgatggaaggctttgtttactatttaatgcagggaacaaaaatattgatgtggtattttatcttctaaaattcaatttccaattatcagtagaatagtacagtctggaatatgttttataacactaaaagtcaacttcatcagGTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAA
                                    |||   | | |  | |     ||||  || ||  ||| |||| ||   | ||  | ||| |   | || | |   |||   | | |    ||  |     || |    || ||||  ||  || | ||||| || || || ||||| || ||||||||||||||||| || || || |||||||||||||| |||
------------------------------------gttagttttctcctactt---acaaccatgttcttgtagtatctt---tactgcatttccagaacaaagttttgatagtg-aatgctaattgtgac----ttcagGGGACAAAAA--CA--TTGAGCAGGTTAACCAGATTCGGGACTCTTTGGCTATTATGGGTGATAATAGTACAGCCTTTAGCTTACCACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagaatagtacagtctggaatatgttttataacactaaaagtcaacttcatcagGTCAATCAAATCCGGGATTCATTGGCTATTATGGGTGACAACAGCACTGCCTTTAGCTTACCGCAA
                                 cactaaa  putative branch site (score: 2)
                                              cttcatc  putative PPT
                   aatatgttttataaca  TA-rich tract