Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaactaagcatcacaagcttatattgtattatgataaacatttattgtcctttctgttttctttatatcccctttctttgttttcttcctttttgtttttcaatcttattctgtgaatctcgtttccatttagGTTGTGGAGAAGACGATTCGTCCAAGTCTGGTTGAGCTCAGCGAGGATCCTGATGTTGATGTAAGATTTTTTTCCAATCAAGCACTTCACGCAATGGATC

Basic information

species Glycine max
transcript GLYMA02G10790.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10790.1 (Glycine max), 3'ss of exon 12
lower sequence: AT3G25800.1 (Arabidopsis thaliana), 3'ss of exon 11
gtaagcaactaagcatcacaagcttatattgtattatgataaacatttattgtcctttctgttttctttatatcccctttctttgttttcttcctttttgtttttcaatcttattctgtgaatctcgtttccatttagGTTGTGGAGAAGACGATTCGTCCAAGTCTGGTTGAGCTCAGCGAGGATCCTGATGTTGATGTAAGATTTTTTTCCAATCAAGCACTTCACGCAATGGATC
                                          |  |  || | |   ||  |||  |||||       |  |||||| |         | | ||| | | |  || ||||         |  |   |||||||||||||||||||||||||  | || || ||||| ||||||||||| ||||||||||| || |||||  | || ||||| || ||  | || ||  
----------------------------------------gtaagtgcatcgccaactccatttagtttat-------tagtttgttatgaaaacagctctgtttgattttggttttgtgg--------tgaaaaaagGTTGTGGAGAAGACGATTCGTCCTGGGCTTGTGGAGCTAAGCGAGGATCCAGATGTTGATGTCAGGTTTTTCGCAAACCAAGCTCTACAATCTATTGACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15202124|gb|BI425235.1|BI425235
EST:     TCAATGTGGCAAAGGTCTTGGAGTCAATCTTCCCCATAGTGGATCAATCT                         GTTGTGGAGAAGACGATTCGTCCAAGTCTGGTTGAGCTCAGCGAGGATCCT
genomic: TCAATGTGGCAAAGGTCTTGGAGTCAATCTTCCCCATAGTGGATCAATCTgtaagcaact ... ttccatttagGTTGTGGAGAAGACGATTCGTCCAAGTCTGGTTGAGCTCAGCGAGGATCCT
EST: gi|58015550|gb|CX702292.1|CX702292
EST:     TCAATGTGGCAAAGGTCTTGGAGTCAATCTTCCCCATAGTGGATCAATCT                         GTTGTGGAGAAGACGATTCGTCCAAGTCTGGTTGAGCTCAGCGAGGATCCT
genomic: TCAATGTGGCAAAGGTCTTGGAGTCAATCTTCCCCATAGTGGATCAATCTgtaagcaact ... ttccatttagGTTGTGGAGAAGACGATTCGTCCAAGTCTGGTTGAGCTCAGCGAGGATCCT
EST: gi|6666156|gb|AW277615.1|AW277615
EST:     TCAATGTGGCAAAGGTCTTGGAGTCAATCTTCCCCATAGTGGATCAATCT                         GTTGTGGAGAAGACGATTCGTCCAAGTCTGGTTGAGCTCAGCGAGGATCCT
genomic: TCAATGTGGCAAAGGTCTTGGAGTCAATCTTCCCCATAGTGGATCAATCTgtaagcaact ... ttccatttagGTTGTGGAGAAGACGATTCGTCCAAGTCTGGTTGAGCTCAGCGAGGATCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttcttcctttttgtttttcaatcttattctgtgaatctcgtttccatttagGTTGTGGAGAAGACGATTCGTCCAAGTCTGGTTGAGCTCAGCGAGGATCCTGATGTTGATGTAAGATTTTTTTCCAATCAAGCACTTCACGCAATGGATC
                                       tctcgtttccattt  CT-rich tract
           tttttgtttttcaatc  TA-rich tract