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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taatataaaatgattttcttgtgttggacatgcaaaagttgtggcatttccatatgctaagtaatcactttttcattttataaggtttttgaaattgtagGTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATTG

Basic information

species Glycine max
transcript GLYMA02G10590.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10590.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G068212_T01 (Zea mays), 3'ss of exon 12
-taatataaaatgattttcttgtgttggacatgcaaaagttgtggcatttccatatgctaagtaatcactttttcattttataaggtttttgaaattgtagGTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATTG
 ||| || | | |  |    | | ||     |   | |||| |  | ||  |||     ||  | ||  ||||| ||| ||| |  ||| |    || |||||||   | ||| | || ||||| |||||||||||||||||||||||||| |
gtaaaatcacaag--tcatctatttttagtttatcatagttttatcgttgtcatgaaagaaacattccttttttaattgtattatttttct----ttttagGTTGCATTCTCATTGGCCTTTGTGATTCATGAGTCAGCAAATCCACATATAG

upper sequence: GLYMA02G10590.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 3'ss of exon 12
---taatataaaatgattttcttgtgttggacatgcaaaagttgtggcatttccatatgctaa-gtaa-tcactttttcattttataaggtttttgaaattgtagGTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATTG
     |||  | || | | |||  ||||||| | |||    |  |  ||  ||| ||   | |  ||  | |   | |    |   ||   ||||||||||||||||||| | ||| |||||||||||||| ||||||||||||||||| | | |||
attcgatagtacattaatgtctactgttggata-gca----tgataacacctccgtaacatgatatagcttatcgtattgactctgaaaaattttgaaattgtagGTTGGTGCTTCGCTTGCTTTTGTCATCCATGAGTCAGCAAATCCTCGTCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335397|gb|CO979263.1|CO979263
EST:     CTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGCGTCCTTGTTGGG                         GTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATT
genomic: CTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGCGTCCTTGTTGGGgtgagtacaa ... gaaattgtagGTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttccatatgctaagtaatcactttttcattttataaggtttttgaaattgtagGTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATTG
                       tttttcattttataag  TA-rich tract