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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtggctttgagaaactaacattccaattctttgtttaggctgttgagatattgaggactgattatgaaccctcggatttagatatcctctatgctgaaggagttacttcatccaatgggatggcttctggtagAGTTTTCATTTCCTCGGCCAGCTCCTGAGGAAACTGTCGACACTGCCGATCTACATGATTCTTTAGTTAG

Basic information

species Glycine max
transcript GLYMA02G06910.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06910.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 7
----------------------------------------------------------gttagtggctttgagaaactaacattccaattctttgtttaggctgttgagatattgaggactgattatgaaccctcggatttagatatcctctatgctgaaggagttacttcatccaatgggatggcttctggtagAGTTTTCATTTCCTCGGCCAGCTCCTGAGGAAACTGTCGACACTGCCGATCTACATGATTCTTTAGTTAG
                                                             |||   |||   | | |          ||   || |||||| ||||| |||||||| || || ||||||||||| ||| | || ||||| ||||| || || |||||||||||||||||| | |||| || | || || |                                                                
ttcctgtttttgtgttttttgttacccttgcagtttagtgatgattatgacaaacttttgaagtttatttttaatatttctgggtttttttcctggttagGCCGTTGATATATTGAGAACAGACTATGAACCCTCAGATGTGGACATCCTATATGCCGAGGGGGTTACTTCATCCAATGGGCTTGCTTGTG-TGGACTTCT----------------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagatatcctctatgctgaaggagttacttcatccaatgggatggcttctggtagAGTTTTCATTTCCTCGGCCAGCTCCTGAGGAAACTGTCGACACTGCCGATCTACATGATTCTTTAGTTAG
                                             cttct  CT-rich tract