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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtcccacttattttaggatcatcagtgttctgtgctgagttttctttgttaaagtttaatgctttaactcttttccagGTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCTGTTGAGGGTTATGAGCCAATTGAATTTGTGCTTACAAAAACATGTG

Basic information

species Glycine max
transcript GLYMA02G05950.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05950.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv04s0023g02560.t01 (Vitis vinifera), 3'ss of exon 14
gtatgg-tcccacttattttaggatcatcagtgttctgtgctgagttttctttgttaaagtttaatgctttaactcttttccagGTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCTGTTGAGGGTTATGAGCCAATTGAATTTGTGCTTACAAAAACATGTG
|||||| |    ||| ||   | |  ||  |  |  | | |    |||  | |  | |  ||  ||  | | |   | ||  |||||||  ||||||| |||| |||||||||||| |||| || || || || |||||||||||||| ||| | |||   || |||||||  ||||
gtatggatatttcttgttgctgcaatatttgcatcttctccaatatttgatcttctgatcttccat-ttatgatggtctt--agGTGAGAAGGCCCGTGATACTCCATATGAAGTTGATATTACTATTCCAGTAGAGGGTTATGAGCCCATTCAGTTTACTCTCACAAAAATGTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192329023|gb|FK021405.1|FK021405
EST:     GAAGCCTCCTACAACGTTGTCACCCTCAATGTTGATTGTTGATTGGAGAT                         GTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCTGTTG
genomic: GAAGCCTCCTACAACGTTGTCACCCTCAATGTTGATTGTTGATTGGAGATgtatggtccc ... tcttttccagGTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCTGTTG
EST: gi|6846005|gb|AW348295.1|AW348295
EST:     ACAACGTTGTCACCTTCAATGTTGATTGTTGATTGGAGAT                         GTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCTGTTG
genomic: ACAACGTTGTCACCCTCAATGTTGATTGTTGATTGGAGATgtatggtccc ... tcttttccagGTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCTGTTG
EST: gi|58020577|gb|CX707319.1|CX707319
EST:     GAAGCCTCCTACAACGTTGTCACCCTCAATGTTGATTGTTGATTGGAGAT                         GTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCTGTTG
genomic: GAAGCCTCCTACAACGTTGTCACCCTCAATGTTGATTGTTGATTGGAGATgtatggtccc ... tcttttccagGTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgttctgtgctgagttttctttgttaaagtttaatgctttaactcttttccagGTGAGGTGGCCCGTAATACCCCATATGAAGTTAATATCACAATCCCTGTTGAGGGTTATGAGCCAATTGAATTTGTGCTTACAAAAACATGTG
                                      ctttaac  putative branch site (score: 3)
                                      ctttaactcttttcc  CT-rich tract
                ttttctttgttaaagt  TA-rich tract