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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacttgagatttcaattgtatttattgtttccgttttctaatttttattttgttttctgattgatgctttatatgtttcagGCATATGTTTCGATGTTGTACCTTAGAAAATTTTCTAACTTCTCTATCATACTAAGGGGGAAACTTGTGGATCAATTTAACATTGTGGACGATTTAATAT

Basic information

species Glycine max
transcript GLYMA02G05800.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011230|gb|BG726152.1|BG726152
EST:     CTGTTCAGCTTCAGTCACATATTTCTTACCGCCTTCGTTTTTCTTTACGG                         GCATATGTTTCGATGTTGTACCTTAGAAAATTTTCTAACTTCTCTATCATA
genomic: CTGTTCAGCTTCAGTCACATATTTCTTACCGCCTTCGTTTTTCTTTACGGgtaatacttg ... tatgtttcagGCATATGTTTCGATGTTGTACCTTAGAAAATTTTCTAACTTCTCTATCATA
EST: gi|207718392|gb|GD700398.1|GD700398
EST:     TTTCTTACCGCCTTCGTTTTTCTTTACGG                         GCATATGTTTCGATGTTGTACCTTAGAAAATTTTCTAACTTCTCTATCATA
genomic: TTTCTTACCGCCTTCGTTTTTCTTTACGGgtaatacttg ... tatgtttcagGCATATGTTTCGATGTTGTACCTTAGAAAATTTTCTAACTTCTCTATCATA
EST: gi|193421350|gb|FK388683.1|FK388683
EST:     CTGTTCAGCTTCAGTCACATATTTCTTACCGCCTTCG-TTTTCTTTACGG                         GCATATGTTTCGATGTTGTACCTTAGAAAATTTTCTAACTTCTCTATCATA
genomic: CTGTTCAGCTTCAGTCACATATTTCTTACCGCCTTCGTTTTTCTTTACGGgtaatacttg ... tatgtttcagGCATATGTTTCGATGTTGTACCTTAGAAAATTTTCTAACTTCTCTATCATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttccgttttctaatttttattttgttttctgattgatgctttatatgtttcagGCATATGTTTCGATGTTGTACCTTAGAAAATTTTCTAACTTCTCTATCATACTAAGGGGGAAACTTGTGGATCAATTTAACATTGTGGACGATTTAATAT
       ttttctaatttttatt  TA-rich tract