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gtaatcatgccaagactaatttgataaatgccaaatattttgtcaagttaatttgattttctatataggccatgtttgagcatgagaaattcatcatttctcccataccttcccaaatgtttgaaatcataagaaaaaaggggtcattatgtagaattgacaattacctataacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGATTCAACAGTTGCAGAAATGTGGTTTGTAATTTTACTGAAG
species | Glycine max |
transcript | GLYMA02G04320.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|120490930|gb|EH219097.1|EH219097
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|120495674|gb|EH223841.1|EH223841
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|120529136|gb|EH257270.1|EH257270
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|31471775|gb|CD413803.1|CD413803
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|23064228|gb|BU579001.1|BU579001
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|23064069|gb|BU578842.1|BU578842
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|22525213|gb|BU084024.1|BU084024
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTEST: gi|120534088|gb|EH262221.1|EH262221
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTT
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|120529217|gb|EH257351.1|EH257351
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|31475863|gb|CD417891.1|CD417891
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|31465137|gb|CD407165.1|CD407165
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|22522821|gb|BU081632.1|BU081632
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|31561742|gb|CD487580.1|CD487580
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAAGCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGEST: gi|20813120|gb|BQ297598.1|BQ297598
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAG
EST: CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGCTAATGACTGATGGEST: gi|13482372|gb|BG511715.1|BG511715
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|22525567|gb|BU084378.1|BU084378
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGCTAATGACTGATGGEST: gi|120495271|gb|EH223438.1|EH223438
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|13481734|gb|BG511077.1|BG511077
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|208071978|gb|GD867698.1|GD867698
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGAGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGCTAATGACTGATGGEST: gi|23064220|gb|BU578993.1|BU578993
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAEST: gi|31467900|gb|CD409928.1|CD409928
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATA
EST: CAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGGGCAAGGATAATGACTGATGGEST: gi|31475761|gb|CD417789.1|CD417789
genomic: CAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|120494927|gb|EH223094.1|EH223094
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|13481252|gb|BG510595.1|BG510595
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGATCAAGGCTAATGACTGATGGEST: gi|23735380|gb|BU765969.1|BU765969
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|17519349|gb|BM188391.1|BM188391
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGEST: gi|193715695|gb|FK648970.1|FK648970
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAG
EST: CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGEST: gi|120493211|gb|EH221378.1|EH221378
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGG
EST: AATCCACCTCAACCTGGAGATATTTCGTATGACCAATTTGTTAGGGATAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|17400294|gb|BM177076.1|BM177076
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGCTAATGACTGATGGEST: gi|16349405|gb|BI975000.1|BI975000
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: AATCCACCTCAACCTGGAGATATTTCTTATGACAAA-TTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGEST: gi|20812986|gb|BQ297464.1|BQ297464
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
EST: CATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAG CACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGCTAATGACTGATGG
genomic: AATCCACCTCAACCTGGAGATATTTCTTATGACAAATTTGTTAGGGAGAGgtaatcatgc ... taacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGG
atcataagaaaaaaggggtcattatgtagaattgacaattacctataacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGATTCAACAGTTGCAGAAATGTGGTTTGTAATTTTACTGAAG
ctataac putative branch site (score: 3)
aagaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcatgccaagactaatttgataaatgccaaatattttgtcaagttaatttgattttctatataggccatgtttgagcatgagaaattcatcatttctcccataccttcccaaatgtttgaaatcataagaaaaaaggggtcattatgtagaattgacaattacctataacttgcagCACCGGAATACTTGAATCACTGAGAAGAAGAGCAAGGATAATGACTGATGGATTCAACAGTTGCAGAAATGTGGTTTGTAATTTTACTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG