Sequence
atgc intronic sequence ATGC exonic sequencegtgagtttatctttaaatttctgcaacataaatctttgaagtctcttttgagctgaattttgagtgattaatttgatttattttacagATAAAGGATGAAGTGAGGAACAGCTTGAATTTCATCAATTATGTCTATAAGATATTTGGTTTCACATATGAGCTGAAGCTTTCAACG
Basic information
species | Glycine max |
transcript | GLYMA02G03750.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G03750.1 (Glycine max), 3'ss of exon 12
lower sequence: GRMZM2G553314_T01 (Zea mays), 3'ss of exon 13
-------gtgagtttatcttt-aaatttctgcaacataaatctttgaagtctcttttgagctgaattttga-gtgatt----aatttgatttattttacagATAAAGGATGAAGTGAGGAACAGCTTGAATTTCATCAATTATGTCTATAAGATATTTGGTTTCACATATGAGCTGAAGCTTTCAACG
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catacattctaatttgcattagaaaagtttacaatatgg-ttactgtttcttccttttctctgacagtagatgtactttaaaagattgttttttgttgcagATCAAGGATGAAGTTAAGGCTGTTTTGGAATTCATCAATTATGTTTATGAGATATTTGGCTTCAAATATGAGTTGGAGTTGTCTACG
upper sequence: GLYMA02G03750.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv19s0015g00470.t01 (Vitis vinifera), 3'ss of exon 13
gtgagtttatctttaaatttctgcaacataaatctttg---aagtctcttttgag---ctgaattttgagtgattaatttgattt--attttacagATAAAGGATGAAGTGAGGAACAGCTTGAATTTCATCAATTATGTCTATAAGATATTTGGTTTCACATATGAGCTGAAGCTTTCAACG
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gtgattttagagttaatgatatgtagca-aaatgttggtataactctttttttgtttcctgtaccttgggtgaatatttttacttcaaattttcagATAAAGGATGAAGTCATGGGTGTCTTGGATTTCATCAATTATGCCTACAATATATTTGGCTTCACTTATGAGCTGAAGCTATCTACA
upper sequence: GLYMA02G03750.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 13
gtgagtttatctttaaatttctgcaacataaatctttga----agtctcttttgag---ctgaattttgagtgattaatttgatttat--tttacagATAAAGGATGAAGTGAGGAACAGCTTGAATTTCATCAATTATGTCTATAAGATATTTGGTTTCACATATGAGCTGAAGCTTTCAACG
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gtgattttagagttaatgatatgtagc-taaatgttagtgtttactctctttttgttttctgcaccttggctgattgtttttacttaaaattttcagATAAAGGATGAAGTCATGGGCGTCTTGGAGTTCATCAATTATGCCTATAACATATTTGGGTTCACTTATGAGCTGAAGCTATCAACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254320235|gb|GR829423.1|GR829423EST: GACGATGCACATATTTTCTGCAGGGAGTCTCAG ATAAAGGATGAAGTGAGGAACAGCTTGAATTTCATCAATTATGTCTATAAG
genomic: GACGATGCACATATTTTCTGCAGGGAGTCTCAGgtgagtttat ... tattttacagATAAAGGATGAAGTGAGGAACAGCTTGAATTTCATCAATTATGTCTATAAG
EST:
gi|14258843|gb|BG881751.1|BG881751EST: GACGATGCACATATTTTCTGCAGGGAGTCTCAG ATAAAGGATGAAGTGAGGAACAGCTTGAATTTCATCAATTATGTCTATAAG
genomic: GACGATGCACATATTTTCTGCAGGGAGTCTCAGgtgagtttat ... tattttacagATAAAGGATGAAGTGAGGAACAGCTTGAATTTCATCAATTATGTCTATAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttgaagtctcttttgagctgaattttgagtgattaatttgatttattttacagATAAAGGATGAAGTGAGGAACAGCTTGAATTTCATCAATTATGTCTATAAGATATTTGGTTTCACATATGAGCTGAAGCTTTCAACG
tttatttt CT-rich tract
aattttgagtgattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtttatctttaaatttctgcaacataaatctttgaagtctcttttgagctgaattttgagtgattaatttgatttattttacagATAAAGGATGAAGTGAGGAACAGCTTGAATTTCATCAATTATGTCTATAAGATATTTGGTTTCACATATGAGCTGAAGCTTTCAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC