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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaaccaactaccaatcaccttgtctgttattgacttcaataactatattttcaaactataaaaacaaattttcatgagaaactttttcaatataaaatcattttttttcattattgatttaaaagttacatgattgattgagtgcatacaaatgacctgacttgtttctaatgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG

Basic information

species Glycine max
transcript GLYMA01G42940.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18039168|gb|BM307462.1|BM307462
EST:     GAGCCTT-TATTTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTG                         GTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
genomic: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaacca ... atgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
EST: gi|254332376|gb|GR846421.1|GR846421
EST:     GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTG                         GTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
genomic: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaacca ... atgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
EST: gi|192332460|gb|FK024221.1|FK024221
EST:     GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTG                         GTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
genomic: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaacca ... atgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
EST: gi|151395947|gb|EV265824.1|EV265824
EST:     GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTG                         GTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
genomic: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaacca ... atgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
EST: gi|151400533|gb|EV270347.1|EV270347
EST:     GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATACGGCTTTG                         GTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
genomic: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaacca ... atgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
EST: gi|192332461|gb|FK024222.1|FK024222
EST:     GAGCCTTAGAAGTGGATATTTTTTGTGGGCAATGTTTGCATATGGCTTTG                         GTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
genomic: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaacca ... atgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
EST: gi|7284908|gb|AW597395.1|AW597395
EST:     GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTG                         GTCTTTTAGTTACATACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC
genomic: GAGCCTTAGAAGTGGATATTTCTTGTGGGCAATGTTTGCATATGGCTTTGgtgagaacca ... atgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacatgattgattgagtgcatacaaatgacctgacttgtttctaatgttggtagGTCTTTTAGTTACGTACGTGGCACTAAACTTGATGGACGGGCATGGCCAACCAGCACTACTATACATCGTTCCATTTACCCTTG
                                        ttctaat  putative branch site (score: 2)
                    atacaaat  TA-rich tract