1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...acaatttttctgttattttaaaagattaaaattctttacttgttactaggatttgcttgaatattctacacttaagttgatcaaactcttcgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCAATTAGAAGTTCTTTGCAGCATTTATGCTTTGTTTCTACTTCATAAGCAT
species | Glycine max |
transcript | GLYMA01G41600.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAA ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCAEST: gi|213592086|gb|DB975236.1|DB975236
genomic: GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
EST: TTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGCGGTTTCCAA ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCAEST: gi|10255025|gb|BE822791.1|BE822791
genomic: TTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
EST: GATTTAGTTGATGCNNNAGTTGCTCATTNNNAGTTAATCGTTGTTTCCAA ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCAEST: gi|12773194|gb|BG238121.1|BG238121
genomic: GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
EST: GCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAA ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCAEST: gi|58017133|gb|CX703875.1|CX703875
genomic: GCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
EST: GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAA ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCAEST: gi|308222719|gb|HO760629.1|HO760629
genomic: GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
EST: GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAA ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCAEST: gi|58018391|gb|CX705133.1|CX705133
genomic: GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
EST: GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAA ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCAEST: gi|19271160|gb|BM887416.1|BM887416
genomic: GATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
EST: GATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAA ATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
genomic: GATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAgtgagcttct ... cgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCA
ctaggatttgcttgaatattctacacttaagttgatcaaactcttcgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCAATTAGAAGTTCTTTGCAGCATTTATGCTTTGTTTCTACTTCATAAGCAT
agttgat putative branch site (score: 5)
ctcttcgtttttt putative PPT
ttgaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaatttttctgttattttaaaagattaaaattctttacttgttactaggatttgcttgaatattctacacttaagttgatcaaactcttcgttttttagATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCAATTAGAAGTTCTTTGCAGCATTTATGCTTTGTTTCTACTTCATAAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - -ttctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaact