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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccatcctgacttactgggcttttgttttgtttgttttaaacattgatacgtggataccttaacgttgcttagaactcagtaaatttatctaatttactctctgaagGTGTGGGAAAAGAGTGGATACAACACTGTTGAGTGGGTTCGTTATATTACAAAAGCGGGATCATGCGAGATAAGGTGCTAGGCAACACATGTGGAAACGT

Basic information

species Glycine max
transcript GLYMA01G40700.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G40700.1 (Glycine max), 3'ss of exon 12
lower sequence: EFJ22278 (Selaginella moellendorffii), 3'ss of exon 12
gtatccatcctgacttactgggcttttgttttgtttgttttaaacattgatacgtggataccttaacgttgcttagaactcagtaaatttatctaatttactctctgaagGTGTGGGAAAAGAGTGGATACAACACTGTTGAGTGGGTTCGTTATATTACAAAAGCGGGATCATGCGAGATAAGGTGCTAGGCAACACATGTGGAAACGT-
                                                  || |   |  | |     ||| |||| | |   |  | | || |  ||    |||   |||||||||||||||||||||||| ||| || || ||||| || || || |||| ||| ||||| | ||| |||||||||||   || || || || || |  
-------------------------------------------------gtaagcaaactcgtcgcgattgtttaggaattc-tggaatgatttctttctggctcctcagGTGTGGGAAAAGAGTGGATACAGCACAGTGGAATGGGTACGCTACATCACAAGAGCTGGATCGTACGAAATAAGGTGCTAAA-AAAACGTGAGGGAAGGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254333305|gb|GR850555.1|GR850555
EST:     GTTCCCATGTTTACGGCATCTGGTTTACGTGTCCGTTTTCTAAAG                         GTGTGGGAAAAGAGTGGATACAACACTGTTGAGTGGGTTCGTTATATTACA
genomic: GTTCCCATGTTTACGGCATCTGGTTTACGTGTCCGTTTTCTAAAGgtatccatcc ... ctctctgaagGTGTGGGAAAAGAGTGGATACAACACTGTTGAGTGGGTTCGTTATATTACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggataccttaacgttgcttagaactcagtaaatttatctaatttactctctgaagGTGTGGGAAAAGAGTGGATACAACACTGTTGAGTGGGTTCGTTATATTACAAAAGCGGGATCATGCGAGATAAGGTGCTAGGCAACACATGTGGAAACGT
                                   atctaat  putative branch site (score: 3)
                                         tttactctct  CT-rich tract
                        tcagtaaatttatcta  TA-rich tract