Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaataaaatagaccggtttatgtgtcaaattctgtgaatataattgagctagtatccgtttcacataataacttggctatctttttcttatttctttcaatttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTGATTATCGACATGGTACTGGTCATGGAATTGGGTCCTATCTGAATGTTCA

Basic information

species Glycine max
transcript GLYMA01G38410.4
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38410.4 (Glycine max), 3'ss of exon 12
lower sequence: AT4G36760.1 (Arabidopsis thaliana), 3'ss of exon 11
gtataaataaaatagaccggtttatgtgtcaaattctgtgaatataatt---gagctagtatccgtttcacataataa-cttggctatctttttcttatttctttcaatttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTGATTATCGACATGGTACTGGTCATGGAATTGGGTCCTATCTGAATGTTCA
                      || ||    |  ||  ||||| |  ||   |  | |   |  | ||    || | | |||   ||| ||    |   |   |   | ||  |  |||  || | |||||||||||||| |||  ||||||||||||| ||||  | ||||||||||||||||||||||||||| |||| || || ||   ||||||
---------------------gtaagttatgatctccttgaattttgtttctgtaccaacttgagatttggctattgatcttttatatgttgcattggctatatctgaatt--tacagGCTATACACTTGATATTCTTGCTCGAGCTCCTTTGTGGAAGTATGGGTTGGATTATCGACATGGTACTGGTCATGGAGTTGGTTCTTACCTTTGTGTTCA

upper sequence: GLYMA01G38410.4 (Glycine max), 3'ss of exon 12
lower sequence: Vv04s0023g01300.t01 (Vitis vinifera), 3'ss of exon 12
gtataaataaaatagaccggtttatgtgtcaaattctgtgaatataattgagctagtatccgtttcacataataacttggctatctttttcttatttctttcaatttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTGATTATCGACATGGTACTGGTCATGGAATTGGGTCCTATCTGAATGTTCA
         ||||     | ||      |     | | | || |||  |      |    | | | |  |  ||| ||  |||| || || ||||   |    | || ||  ||| ||  | ||||| |||||||| ||  | || |||||||||||||| ||||||||||||||||| ||||||||||||||||| || || || ||||||||
-------ccaaatttgttgcttgtaactttgttctatttaaagatacatagatatgcgcacatatgatgt--taaattcactat-ttatttttataaat----aatttttacagGACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTGATTATCGACATGGAACTGGTCATGGAATTGGATCTTACCTTAATGTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193667628|gb|FK609810.1|FK609810
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTG
EST: gi|208323699|gb|GE122270.1|GE122270
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|208024918|gb|GD826592.1|GD826592
EST:     AAAGGGTCACGTTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|208077550|gb|GD878231.1|GD878231
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|208144459|gb|GD941650.1|GD941650
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATT
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATT
EST: gi|11274775|gb|BF325110.1|BF325110
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193433027|gb|FK395721.1|FK395721
EST:     GTCACATTGTCTTCTTTGGTTAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: GTCACATTG-C-TC-TTGG--AAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|254345308|gb|GR851577.1|GR851577
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193345566|gb|FK313705.1|FK313705
EST:     AGGGTCACATTGTCTTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AGGGTCACATTG-C-TCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|13480236|gb|BG509579.1|BG509579
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|207835974|gb|GD808715.1|GD808715
EST:     CACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTG
genomic: CACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTG
EST: gi|208127430|gb|GD925372.1|GD925372
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTT
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTT
EST: gi|208313226|gb|GE110924.1|GE110924
EST:     AGGGTCACATTGTCTTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AGGGTCACATTG-C-TCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|208333048|gb|GE128151.1|GE128151
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193710114|gb|FK643386.1|FK643386
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGG
EST: gi|193360970|gb|FK323850.1|FK323850
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCC-GAATTCCTTTGTGGAAGG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGG
EST: gi|208080090|gb|GD878462.1|GD878462
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193380761|gb|FK346044.1|FK346044
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|298167280|gb|HO010719.1|HO010719
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGGTATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|207798702|gb|GD769115.1|GD769115
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193334513|gb|FK298863.1|FK298863
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|207787802|gb|GD761544.1|GD761544
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTT
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTT
EST: gi|208333932|gb|GE129959.1|GE129959
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193419440|gb|FK383580.1|FK383580
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193357067|gb|FK319647.1|FK319647
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|207766088|gb|GD736891.1|GD736891
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAACTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|208213003|gb|GE012314.1|GE012314
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|208038996|gb|GD834616.1|GD834616
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTCG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|207801801|gb|GD772989.1|GD772989
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGT
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGT
EST: gi|23057556|gb|BU578230.1|BU578230
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193665284|gb|FK613876.1|FK613876
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|208280146|gb|GE075444.1|GE075444
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|208082766|gb|GD880436.1|GD880436
EST:     CTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGA
genomic: CTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGA
EST: gi|193563514|gb|FK519961.1|FK519961
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193723997|gb|FK656347.1|FK656347
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|207726389|gb|GD703735.1|GD703735
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|207751286|gb|GD725687.1|GD725687
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|308222672|gb|HO760582.1|HO760582
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|308222671|gb|HO760581.1|HO760581
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193415192|gb|FK375756.1|FK375756
EST:     AAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAAATG                         GGCATTCNCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTT
genomic: AAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAA-TGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTT
EST: gi|208172250|gb|GD966655.1|GD966655
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|207748553|gb|GD720376.1|GD720376
EST:     TCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: TCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193407771|gb|FK373119.1|FK373119
EST:     AGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGGACAAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTT
genomic: AGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAAT-GGGAC-AAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTT
EST: gi|193717194|gb|FK649922.1|FK649922
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193480154|gb|FK447288.1|FK447288
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193597274|gb|FK554490.1|FK554490
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATT
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATT
EST: gi|193609346|gb|FK562966.1|FK562966
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193541183|gb|FK498739.1|FK498739
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTT
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTT
EST: gi|208093235|gb|GD891882.1|GD891882
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAAATTCCTTTGTGGAAGG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAA-TTCCTTTGTGGAAGG
EST: gi|208200295|gb|GE001307.1|GE001307
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193631112|gb|FK579555.1|FK579555
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|207726087|gb|GD702789.1|GD702789
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGAACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193401211|gb|FK370154.1|FK370154
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193404559|gb|FK368212.1|FK368212
EST:     AAGGGTTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAGGG-TCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|207717247|gb|GD697224.1|GD697224
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193342663|gb|FK306489.1|FK306489
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTT-GTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|13482091|gb|BG511434.1|BG511434
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193340054|gb|FK305393.1|FK305393
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193601591|gb|FK553486.1|FK553486
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|298186383|gb|HO037016.1|HO037016
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193628128|gb|FK576742.1|FK576742
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193339700|gb|FK302303.1|FK302303
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|208070001|gb|GD868774.1|GD868774
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|5753558|gb|AI960845.1|AI960845
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|7588809|gb|AW704596.1|AW704596
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|208257117|gb|GE052318.1|GE052318
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193724486|gb|FK662674.1|FK662674
EST:     AAAGGGTCACGTTGCTCTTGGAAATGC-AGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193532042|gb|FK489244.1|FK489244
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|207734591|gb|GD713340.1|GD713340
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193609071|gb|FK561655.1|FK561655
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|15286677|gb|BI470568.1|BI470568
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
EST: gi|193601653|gb|FK549488.1|FK549488
EST:     AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATG                         GGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG
genomic: AAAGGGTCACATTGCTCTTGGAAATGCTAGATTTCCCAATGGGACAAATGgtataaataa ... tttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgtttcacataataacttggctatctttttcttatttctttcaatttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTGATTATCGACATGGTACTGGTCATGGAATTGGGTCCTATCTGAATGTTCA
          taataac  putative branch site (score: 1)
                     ctatctttttcttatt  putative PPT
                          tttttcttatttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtataaataaaatagaccggtttatgtgtcaaattctgtgaatataattgagctagtatccgtttcacataataacttggctatctttttcttatttctttcaatttcttttagGGCATTCTCTTGATATTCTTGCCCGAATTCCTTTGTGGAAGGATGGTCTTGATTATCGACATGGTACTGGTCATGGAATTGGGTCCTATCTGAATGTTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA