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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatttatttattttgtttgctagggacgtgctttttgtataattgtatggagatgaattgtctcttttttcttcttttttttctccagCTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTGCTTTACCTACTTCAAAGCTCTCCAATAATTTTTCTTCCATGAAATTACA

Basic information

species Glycine max
transcript GLYMA01G35190.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19938441|gb|BQ081721.1|BQ081721
EST:     CATTCCTCCATCCCTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCG                         CTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTG
genomic: CATTCCTCCATCCCTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCGgtttgtattt ... ttttctccagCTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTG
EST: gi|22927291|gb|BU544430.1|BU544430
EST:     CTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCG                         CNNNNAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGT
genomic: CTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCGgtttgtattt ... ttttctccagC-TGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGT
EST: gi|26059828|gb|CA802742.1|CA802742
EST:     CATTCCTCCATCCCTTCGCTACAGAGCAGTAGCGAGAACTCCTCCACCCG                         CTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTG
genomic: CATTCCTCCATCCCTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCGgtttgtattt ... ttttctccagCTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTG
EST: gi|19348400|gb|BM892932.1|BM892932
EST:     CATTCCTCCATCCCTTCAAAACAGAGCAGTAGCGAGAACTCCTCCACCCG                         CTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTG
genomic: CATTCCTCCATCCCTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCGgtttgtattt ... ttttctccagCTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTG
EST: gi|11274199|gb|BF324567.1|BF324567
EST:     CATTCCTCCATCCCTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCG                         CTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATAATCCGGTG
genomic: CATTCCTCCATCCCTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCGgtttgtattt ... ttttctccagCTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTG
EST: gi|9203919|gb|BE330143.1|BE330143
EST:     CATTCCTCCATCCCTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCG                         CTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTG
genomic: CATTCCTCCATCCCTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCGgtttgtattt ... ttttctccagCTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTG
EST: gi|6454955|gb|AW185565.1|AW185565
EST:     CTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCG                         CTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTG
genomic: CTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCGgtttgtattt ... ttttctccagCTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTG
EST: gi|298178671|gb|HO024406.1|HO024406
EST:     CATTCCTCCATCCCTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCG                         CTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTG
genomic: CATTCCTCCATCCCTTCGCAACAGAGCAGTAGCGAGAACTCCTCCACCCGgtttgtattt ... ttttctccagCTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtataattgtatggagatgaattgtctcttttttcttcttttttttctccagCTGGAACAAGAGGAGCACTGGATCAGCAAGGAGTCAAGAGATATTCCGGTGCTTTACCTACTTCAAAGCTCTCCAATAATTTTTCTTCCATGAAATTACA
                    tgaattgtctcttttt  CT-rich tract
                               ttttttcttctttttt  TA-rich tract