1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagttcctaaccaaattaatttctttagatttatttgggaagcactcaatttatgtgccattcttctttcatgccatgtaaattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTGAACAATACCTATGATCAACCTGGTAAATATCGGATTAAGCTGCCAACAG
species | Glycine max |
transcript | GLYMA01G27250.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACT ACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTGEST: gi|254347806|gb|GR854055.1|GR854055
genomic: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACTgtaagttcct ... aattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
EST: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACT ACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTGEST: gi|7588178|gb|AW703979.1|AW703979
genomic: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACTgtaagttcct ... aattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
EST: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACT ACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTGEST: gi|58021548|gb|CX708289.1|CX708289
genomic: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACTgtaagttcct ... aattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
EST: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACT ACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTGEST: gi|151401114|gb|EV270928.1|EV270928
genomic: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACTgtaagttcct ... aattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
EST: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACT ACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTGEST: gi|58018795|gb|CX705537.1|CX705537
genomic: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACTgtaagttcct ... aattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
EST: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACT ACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
genomic: TAGATAATTACAGATACCCATCTGGGCATCAAGGACCATACAAAGTCACTgtaagttcct ... aattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTG
tgggaagcactcaatttatgtgccattcttctttcatgccatgtaaattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTGAACAATACCTATGATCAACCTGGTAAATATCGGATTAAGCTGCCAACAG
tcaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcctaaccaaattaatttctttagatttatttgggaagcactcaatttatgtgccattcttctttcatgccatgtaaattcaccagACTTCCTTGCTAGTACCTGGTAATTACCAAGGAGAGAGAACGATAAAGTTGAACAATACCTATGATCAACCTGGTAAATATCGGATTAAGCTGCCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC