Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactaatacacaacttttgtggaggtttggtgatttcagttaacagccatagttcttggagaacttactcttgcatggtttatgctcatgtaccctgcagATTGCTGTTTATGGTAAAAGCTTTAACCGTTCCGCTAGAGATGCGTGGGAGCTATTCCAGTCAACTGGAGTAGAAACACTTGTGGCCTATGATTGTTCGG

Basic information

species Glycine max
transcript GLYMA01G21270.1
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G21270.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g03220.t01 (Vitis vinifera), 3'ss of exon 5
-aactaatacacaacttttgtggaggt-ttggtgatttcagttaacagccatagttcttggagaacttactcttgcatggtttatgctca-tgtaccctgcagATTGCTGTTTATGGTAAAAGCTTTAACCGTTCCGCTAGAGATGCGTGGGAGCTATTCCAGTCAACTGGAGTAGAAACACTTGTGGCCTATGATTGTTCGG
 | |||   |   |  |||    || | ||  |   ||          |   ||| |||    |  | ||| | |||||  ||  |   | ||| |||| ||||| ||||||||||| ||||||||||| |  || || || ||||| |||||  ||||||| |||||||| || ||| ||||  | |||||||||||||| |
aagctaccgcttgaaattttaacagttgtttctagctttgacgtttgtcttgagtacttt---atttaactgtagcatgtcttgcgacaactgttcccttcagATAGCTGTTTATGGAAAAAGCTTTAATCACTCAGCGAGGGATGCTTGGGAATTATTCCAATCAACTGGTGTTGAAGCACTCATAGCCTATGATTGTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccatagttcttggagaacttactcttgcatggtttatgctcatgtaccctgcagATTGCTGTTTATGGTAAAAGCTTTAACCGTTCCGCTAGAGATGCGTGGGAGCTATTCCAGTCAACTGGAGTAGAAACACTTGTGGCCTATGATTGTTCGG
                aacttac  putative branch site (score: 2)
                                 tttat  TA-rich tract