1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgtttttttcatcattacccttaataagtgtcattttagtatttgaatctaatattaatactcctcgctttcatctgattttttgtttaactgtccccagGAAGCTTGGAACAGATTTAACATGGAAGAACGATAAGCAGTACACTGTTGCGCTATATGATGGCAATGCGCGCGCGGTTGCGACGATTCAAGTTTATTTA
species | Glycine max |
transcript | GLYMA01G07680.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AAGCATTCAACAAAAGTACATTNGCGAGAAGGTTTTTGATCTTTCTAAAG -AAGCTTGGAACAGATTTAACATGGAAGAACEST: gi|9983973|gb|BE658081.1|BE658081
genomic: AAGCATTCAACAAAAGTACATTTGCGAGAAGGTTTTTGATCTT-CTAAAGgtttgacctc ... ctgtccccagGAAGCTTGGAACAGATTTAACATGGAAGAAC
EST: CAAGCATTCAACAAAAGTACATTTGCGAGAAGGTTTTTGATCTTTTAAAG GAAGCTTGGAACAGATTTAACATGGAAGAACGATAAGCAGTACACTGTTGC
genomic: CAAGCATTCAACAAAAGTACATTTGCGAGAAGGTTTTTGATCTTCTAAAGgtttgacctc ... ctgtccccagGAAGCTTGGAACAGATTTAACATGGAAGAACGATAAGCAGTACACTGTTGC
aatctaatattaatactcctcgctttcatctgattttttgtttaactgtccccagGAAGCTTGGAACAGATTTAACATGGAAGAACGATAAGCAGTACACTGTTGCGCTATATGATGGCAATGCGCGCGCGGTTGCGACGATTCAAGTTTATTTA
ctgtcccc CT-rich tract
tgattttttgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttttttcatcattacccttaataagtgtcattttagtatttgaatctaatattaatactcctcgctttcatctgattttttgtttaactgtccccagGAAGCTTGGAACAGATTTAACATGGAAGAACGATAAGCAGTACACTGTTGCGCTATATGATGGCAATGCGCGCGCGGTTGCGACGATTCAAGTTTATTTA
- - - - - - - - -cccttaa